C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SHQ1, H/ACA ribonucleoprotein assembly factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144736 SHQ1 9606 - 3:72749277-72861914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325599 SHQ1-001 72749279-72848480 protein_coding
  ENST00000444040 SHQ1-003 72749279-72848415 nonsense_mediated_decay
  ENST00000463369 SHQ1-004 72749959-72846363 protein_coding
  ENST00000468347 SHQ1-007 72814497-72817250 processed_transcript
  ENST00000468371 SHQ1-002 72749277-72795590 processed_transcript
  ENST00000471526 SHQ1-006 72841045-72848472 nonsense_mediated_decay
  ENST00000475558 SHQ1-008 72809620-72817384 processed_transcript
  ENST00000482785 SHQ1-005 72832369-72861914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325599ENST00000463369ENST00000468371ENST00000471526ENST00000482785
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325599 2.562±0.00 4.293±0.00 0.180±0.00 0.800±0.11 2.406±0.96 1.955±0.66 2.215±1.03 1.250±0.16 1.598±0.32 1.235±0.27 2.963±0.00 3.667±2.17 2.892±1.04 5.071±2.71
ENST00000463369 N/A N/A 0.231±0.00 N/A N/A N/A 0.468±0.00 N/A N/A N/A N/A 0.384±0.00 N/A N/A
ENST00000468371 N/A N/A N/A N/A 0.778±0.00 0.666±0.00 N/A 0.264±0.00 0.257±0.00 0.625±0.00 N/A N/A N/A N/A
ENST00000471526 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.165±0.00 1.509±0.00 N/A N/A 10.604±0.00
ENST00000482785 N/A N/A N/A 2.737±0.00 N/A N/A N/A N/A N/A N/A 1.578±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T9 CIL_0001T9_0002 CGP 3:72371825-72861914
CIL_00059P CIL_00059P_0002 CGP 3:72749277-72998138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0022618 IDA ribonucleoprotein complex assembly
GO:0043065 IDA positive regulation of apoptotic process
GO:2000233 IDA negative regulation of rRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058522 shq1 SHQ1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035378 Shq1 SHQ1 homolog (S. cerevisiae) protein_coding Mus_musculus

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