C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00059P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058522-ENSDARG00000044191 CGP 7955 6:44020489-44125040
GeneTranscriptPositionBiotype
ENSDARG00000044191 (gxylt2)
glucoside xylosyltransferase 2 		ENSDART00000064878 (gxylt2-001) 44095027-44125040 protein_coding
ENSDARG00000058522 (shq1)
SHQ1 homolog (S. cerevisiae) 		ENSDART00000035513 (shq1-001) 44020489-44092562 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00059P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144736-ENSG00000172986 CGP 9606 3:72749277-72998138
GeneTranscriptPositionBiotype
ENSG00000144736 (SHQ1)
SHQ1, H/ACA ribonucleoprotein assembly factor 		ENST00000325599 (SHQ1-001) 72749279-72848480 protein_coding
ENST00000444040 (SHQ1-003) 72749279-72848415 nonsense_mediated_decay
ENST00000463369 (SHQ1-004) 72749959-72846363 protein_coding
ENST00000468347 (SHQ1-007) 72814497-72817250 processed_transcript
ENST00000468371 (SHQ1-002) 72749277-72795590 processed_transcript
ENST00000471526 (SHQ1-006) 72841045-72848472 nonsense_mediated_decay
ENST00000475558 (SHQ1-008) 72809620-72817384 processed_transcript
ENST00000482785 (SHQ1-005) 72832369-72861914 protein_coding
ENSG00000163605 (PPP4R2)
protein phosphatase 4, regulatory subunit 2 		ENST00000356692 (PPP4R2-001) 72996785-73069199 protein_coding
ENST00000460360 (PPP4R2-006) 73064014-73065290 protein_coding
ENST00000470976 (PPP4R2-004) 72996818-73061454 retained_intron
ENST00000476505 (PPP4R2-002) 72997358-73059051 protein_coding
ENST00000482242 (PPP4R2-003) 72996803-73064982 nonsense_mediated_decay
ENST00000488810 (PPP4R2-005) 72996839-73064966 protein_coding
ENST00000495566 (PPP4R2-007) 72996977-73016134 protein_coding
ENSG00000172986 (GXYLT2)
glucoside xylosyltransferase 2 		ENST00000389617 (GXYLT2-001) 72888073-72976926 protein_coding
ENST00000491839 (GXYLT2-003) 72955215-72998138 protein_coding
ENST00000498315 (GXYLT2-002) 72908022-72955181 protein_coding
ENSG00000240135 (PSMD12P)
proteasome 26S subunit, non-ATPase, 12 pseudogene 		ENST00000490962 (PSMD12P-001) 72876737-72878102 unprocessed_pseudogene
ENSG00000241537 (RP11-624D20.1)
 ENST00000495088 (RP11-624D20.1-001) 72772539-72773471 processed_pseudogene
ENSG00000242960 (FTH1P23)
ferritin, heavy polypeptide 1 pseudogene 23 		ENST00000492727 (FTH1P23-001) 72929044-72929593 processed_pseudogene
ENSG00000276890 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000614846 (Metazoa_SRP.1-396) 72926955-72927237 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00059P_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035378-ENSMUSG00000030074 CGP 10090 6:100573081-100805081
GeneTranscriptPositionBiotype
ENSMUSG00000030074 (Gxylt2)
glucoside xylosyltransferase 2 		ENSMUST00000032157 (Gxylt2-001) 100704734-100805081 protein_coding
ENSMUST00000141333 (Gxylt2-002) 100704755-100707674 processed_transcript
ENSMUSG00000035378 (Shq1)
SHQ1 homolog (S. cerevisiae) 		ENSMUST00000089245 (Shq1-002) 100573083-100671139 protein_coding
ENSMUST00000113312 (Shq1-001) 100573081-100671157 protein_coding
ENSMUST00000162776 (Shq1-003) 100662839-100671133 processed_transcript
ENSMUST00000170667 (Shq1-201) 100573082-100671157 protein_coding
ENSMUSG00000079224 (Gm6565)
predicted gene 6565 		ENSMUST00000121217 (Gm6565-001) 100604683-100605120 processed_pseudogene
ENSMUSG00000084157 (Gm15576)
predicted gene 15576 		ENSMUST00000117806 (Gm15576-001) 100726234-100726760 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059P_0001ENSDARG00000044191ENSDART00000064878ENSDARG00000058522ENSDART00000035513CIL_00059P_0002ENSG00000144736ENST00000325599ENST00000444040ENST00000463369ENST00000468347ENST00000468371ENST00000471526ENST00000475558ENST00000482785ENSG00000163605ENST00000356692ENST00000460360ENST00000470976ENST00000476505ENST00000482242ENST00000488810ENST00000495566ENSG00000172986ENST00000389617ENST00000491839ENST00000498315ENSG00000240135ENST00000490962ENSG00000241537ENST00000495088ENSG00000242960ENST00000492727ENSG00000276890ENST00000614846CIL_00059P_0003ENSMUSG00000030074ENSMUST00000032157ENSMUST00000141333ENSMUSG00000035378ENSMUST00000089245ENSMUST00000113312ENSMUST00000162776ENSMUST00000170667ENSMUSG00000079224ENSMUST00000121217ENSMUSG00000084157ENSMUST00000117806
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059P_0001ENSDARG00000044191ENSDART00000064878ENSDARG00000058522ENSDART00000035513CIL_00059P_0002ENSG00000144736ENST00000325599ENST00000463369ENST00000468371ENST00000471526ENST00000482785ENSG00000163605ENST00000356692ENSG00000172986ENST00000389617ENSG00000240135ENST00000490962ENSG00000241537ENST00000495088ENSG00000242960ENST00000492727ENSG00000276890ENST00000614846CIL_00059P_0003ENSMUSG00000030074ENSMUST00000032157ENSMUST00000141333ENSMUSG00000035378ENSMUST00000089245ENSMUST00000113312ENSMUST00000162776ENSMUST00000170667ENSMUSG00000079224ENSMUST00000121217ENSMUSG00000084157ENSMUST00000117806
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044191 ENSDART00000064878 N/A N/A N/A 2.812±0.00 N/A N/A 1.432±0.99 N/A 0.231±0.00 N/A 0.738±0.00 N/A N/A N/A
ENSDARG00000058522 ENSDART00000035513 N/A N/A N/A 0.773±0.48 N/A N/A 0.912±0.85 1.158±1.14 0.718±0.00 N/A 0.686±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144736 ENST00000325599 2.562±0.00 4.293±0.00 0.180±0.00 0.800±0.11 2.406±0.96 1.955±0.66 2.215±1.03 1.250±0.16 1.598±0.32 1.235±0.27 2.963±0.00 3.667±2.17 2.892±1.04 5.071±2.71
ENST00000444040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463369 N/A N/A 0.231±0.00 N/A N/A N/A 0.468±0.00 N/A N/A N/A N/A 0.384±0.00 N/A N/A
ENST00000468347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468371 N/A N/A N/A N/A 0.778±0.00 0.666±0.00 N/A 0.264±0.00 0.257±0.00 0.625±0.00 N/A N/A N/A N/A
ENST00000471526 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.165±0.00 1.509±0.00 N/A N/A 10.604±0.00
ENST00000475558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482785 N/A N/A N/A 2.737±0.00 N/A N/A N/A N/A N/A N/A 1.578±0.00 N/A N/A N/A
ENSG00000163605 ENST00000356692 7.485±0.00 6.890±0.00 N/A 7.084±1.49 6.334±1.27 5.740±0.58 6.094±2.85 7.618±0.61 5.144±1.88 6.162±0.99 4.207±2.97 7.479±0.55 4.770±1.39 12.025±0.83
ENST00000460360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172986 ENST00000389617 N/A N/A N/A N/A 3.567±1.18 3.941±0.00 3.547±0.00 N/A N/A 2.704±0.00 N/A N/A N/A N/A
ENST00000491839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240135 ENST00000490962 N/A 0.008±0.00 N/A N/A 0.007±0.00 N/A N/A N/A N/A 0.058±0.00 0.007±0.00 N/A N/A 0.074±0.05
ENSG00000241537 ENST00000495088 N/A 0.045±0.00 N/A N/A 0.174±0.00 N/A 0.020±0.00 N/A 0.027±0.00 0.104±0.00 N/A 0.088±0.11 N/A N/A
ENSG00000242960 ENST00000492727 0.986±0.00 0.340±0.00 N/A 0.302±0.22 1.031±0.15 0.330±0.08 0.196±0.00 0.800±0.00 0.661±0.55 0.615±0.56 0.302±0.21 0.126±0.08 0.178±0.09 0.335±0.06
ENSG00000276890 ENST00000614846 0.414±0.00 1.780±0.00 N/A 0.764±0.00 0.963±0.00 N/A N/A 0.252±0.00 N/A 0.353±0.00 0.056±0.00 1.684±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030074 ENSMUST00000032157 3.472±2.54 0.862±0.34 N/A 0.237±0.14 2.180±1.50 0.556±0.24 0.747±0.42 0.561±0.06 0.040±0.03 1.001±0.38 0.177±0.07 12.130±5.26 0.234±0.18 1.673±0.43
ENSMUST00000141333 N/A N/A N/A 0.222±0.00 0.978±0.45 N/A 0.265±0.00 0.118±0.01 0.032±0.00 0.193±0.01 0.076±0.02 1.984±0.00 N/A N/A
ENSMUSG00000035378 ENSMUST00000089245 0.439±0.14 2.586±1.33 N/A 3.256±0.00 0.397±0.00 1.411±0.93 N/A 0.902±0.04 1.175±0.43 0.858±0.00 0.346±0.29 1.630±1.36 5.217±4.39 4.347±0.00
ENSMUST00000113312 2.017±1.23 2.005±1.34 3.091±0.64 2.949±0.42 1.594±0.61 1.732±1.00 0.984±0.16 1.950±0.56 3.571±2.68 1.682±0.76 0.460±0.19 3.559±1.01 4.576±0.68 3.240±0.76
ENSMUST00000162776 N/A 2.173±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.404±0.00 N/A N/A
ENSMUST00000170667 N/A 0.515±0.09 N/A N/A 0.797±0.48 1.553±0.51 0.397±0.00 1.175±0.00 0.450±0.00 0.442±0.14 0.102±0.00 2.685±0.62 2.182±1.20 0.601±0.00
ENSMUSG00000079224 ENSMUST00000121217 0.202±0.05 N/A 0.130±0.11 0.471±0.45 N/A N/A 0.206±0.06 0.214±0.08 0.620±0.43 0.180±0.00 0.313±0.10 0.565±0.00 0.052±0.00 0.472±0.15
ENSMUSG00000084157 ENSMUST00000117806 N/A N/A 0.115±0.00 0.039±0.00 0.276±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A

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