C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHQ1, H/ACA ribonucleoprotein assembly factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325599 SHQ1-001 ENSG00000144736 9606 - 3:72749279-72848480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325599 2.562±0.00 4.293±0.00 0.180±0.00 0.800±0.11 2.406±0.96 1.955±0.66 2.215±1.03 1.250±0.16 1.598±0.32 1.235±0.27 2.963±0.00 3.667±2.17 2.892±1.04 5.071±2.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T9 CIL_0001T9_0002 CGP 3:72371825-72861914
CIL_00059P CIL_00059P_0002 CGP 3:72749277-72998138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0022618 IDA ribonucleoprotein complex assembly
GO:0043065 IDA positive regulation of apoptotic process
GO:2000233 IDA negative regulation of rRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170667 Shq1-201 protein_coding Mus_musculus 0 1301
ENSMUST00000113312 Shq1-001 protein_coding Mus_musculus 0 1301
ENSMUST00000089245 Shq1-002 protein_coding Mus_musculus 0 723
ENSMUST00000162776 Shq1-003 processed_transcript Mus_musculus 0 501

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