C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SHQ1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035378 Shq1 10090 - 6:100573081-100671157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089245 Shq1-002 100573083-100671139 protein_coding
  ENSMUST00000113312 Shq1-001 100573081-100671157 protein_coding
  ENSMUST00000162776 Shq1-003 100662839-100671133 processed_transcript
  ENSMUST00000170667 Shq1-201 100573082-100671157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089245ENSMUST00000113312ENSMUST00000162776ENSMUST00000170667
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089245 0.439±0.14 2.586±1.33 N/A 3.256±0.00 0.397±0.00 1.411±0.93 N/A 0.902±0.04 1.175±0.43 0.858±0.00 0.346±0.29 1.630±1.36 5.217±4.39 4.347±0.00
ENSMUST00000113312 2.017±1.23 2.005±1.34 3.091±0.64 2.949±0.42 1.594±0.61 1.732±1.00 0.984±0.16 1.950±0.56 3.571±2.68 1.682±0.76 0.460±0.19 3.559±1.01 4.576±0.68 3.240±0.76
ENSMUST00000162776 N/A 2.173±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.404±0.00 N/A N/A
ENSMUST00000170667 N/A 0.515±0.09 N/A N/A 0.797±0.48 1.553±0.51 0.397±0.00 1.175±0.00 0.450±0.00 0.442±0.14 0.102±0.00 2.685±0.62 2.182±1.20 0.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T9 CIL_0001T9_0003 CGP 6:100228566-100671157
CIL_00059P CIL_00059P_0003 CGP 6:100573081-100805081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0022618 ISS ribonucleoprotein complex assembly
GO:0043065 IEA positive regulation of apoptotic process
GO:2000233 IEA negative regulation of rRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058522 shq1 SHQ1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000144736 SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor protein_coding Homo_sapiens

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