C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sidekick cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146555 SDK1 9606 + 7:3301448-4269000 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389531 SDK1-004 3301587-4266408 protein_coding
  ENST00000404826 SDK1-001 3301448-4269000 protein_coding
  ENST00000426596 SDK1-006 3950920-3958287 protein_coding
  ENST00000466611 SDK1-003 4227155-4266408 processed_transcript
  ENST00000467827 SDK1-009 4232887-4237671 retained_intron
  ENST00000476701 SDK1-002 4129685-4269000 retained_intron
  ENST00000478527 SDK1-005 3950921-3952109 retained_intron
  ENST00000481856 SDK1-008 4174222-4179258 processed_transcript
  ENST00000484011 SDK1-007 3971466-3974758 retained_intron
  ENST00000615806 SDK1-201 3301587-4269000 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389531ENST00000404826ENST00000466611ENST00000476701ENST00000615806
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389531 1.949±0.00 1.001±0.00 0.065±0.00 1.820±0.00 1.300±0.00 0.428±0.22 0.498±0.48 0.429±0.39 0.487±0.00 0.226±0.00 0.925±0.13 1.316±0.31 1.281±0.43
ENST00000404826 N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A 0.483±0.00
ENST00000466611 N/A N/A 0.299±0.00 0.519±0.00 N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A
ENST00000476701 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 1.104±0.00 N/A N/A 1.659±0.00 3.110±0.34
ENST00000615806 1.957±0.00 0.994±0.00 0.392±0.00 0.846±0.72 1.051±0.00 0.392±0.00 N/A N/A N/A 0.125±0.06 0.935±0.45 1.130±0.46 0.725±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M9 CIL_0002M9_0001 CGP 7:2906141-4269000
CIL_0002MA CIL_0002MA_0001 CGP 7:3301448-4771443

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062854 sdk1b sidekick cell adhesion molecule 1b protein_coding Danio_rerio
ENSDARG00000078866 sdk1a sidekick cell adhesion molecule 1a protein_coding Danio_rerio
ENSMUSG00000039683 Sdk1 sidekick homolog 1 (chicken) protein_coding Mus_musculus

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