C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146555-ENSG00000164916 CGP 9606 7:3301448-4771443
GeneTranscriptPositionBiotype
ENSG00000146555 (SDK1)
sidekick cell adhesion molecule 1 		ENST00000389531 (SDK1-004) 3301587-4266408 protein_coding
ENST00000404826 (SDK1-001) 3301448-4269000 protein_coding
ENST00000426596 (SDK1-006) 3950920-3958287 protein_coding
ENST00000466611 (SDK1-003) 4227155-4266408 processed_transcript
ENST00000467827 (SDK1-009) 4232887-4237671 retained_intron
ENST00000476701 (SDK1-002) 4129685-4269000 retained_intron
ENST00000478527 (SDK1-005) 3950921-3952109 retained_intron
ENST00000481856 (SDK1-008) 4174222-4179258 processed_transcript
ENST00000484011 (SDK1-007) 3971466-3974758 retained_intron
ENST00000615806 (SDK1-201) 3301587-4269000 protein_coding
ENSG00000164916 (FOXK1)
forkhead box K1 		ENST00000328914 (FOXK1-001) 4682309-4771443 protein_coding
ENST00000460979 (FOXK1-002) 4740859-4755051 protein_coding
ENST00000496023 (FOXK1-003) 4758009-4760029 retained_intron
ENSG00000211544 (AC069286.1)
 ENST00000390210 (AC069286.1-201) 3419067-3419149 miRNA
ENSG00000224593 (RP11-30B1.1)
 ENST00000430569 (RP11-30B1.1-001) 3338126-3338601 transcribed_processed_pseudogene
ENST00000439177 (RP11-30B1.1-002) 3337889-3338489 processed_transcript
ENSG00000236510 (AC011284.3)
 ENST00000427920 (AC011284.3-001) 3642815-3643784 antisense
ENSG00000236708 (AC073316.1)
 ENST00000437354 (AC073316.1-001) 3264032-3302452 antisense
ENSG00000242802 (AP5Z1)
adaptor-related protein complex 5, zeta 1 subunit 		ENST00000348624 (AP5Z1-001) 4775622-4791768 protein_coding
ENST00000401897 (AP5Z1-201) 4737388-4794395 protein_coding
ENST00000469614 (AP5Z1-004) 4788226-4791750 retained_intron
ENST00000477454 (AP5Z1-007) 4786375-4789039 retained_intron
ENST00000477680 (AP5Z1-002) 4775633-4791755 retained_intron
ENST00000490487 (AP5Z1-008) 4789837-4791727 processed_transcript
ENST00000491375 (AP5Z1-005) 4783323-4785048 retained_intron
ENST00000496303 (AP5Z1-003) 4775652-4794312 retained_intron
CIL_0002MA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039683-ENSMUSG00000056493 CGP 10090 5:141241490-142462014
GeneTranscriptPositionBiotype
ENSMUSG00000039683 (Sdk1)
sidekick homolog 1 (chicken) 		ENSMUST00000074546 (Sdk1-002) 141856787-142213194 protein_coding
ENSMUST00000085774 (Sdk1-001) 141241490-142215586 protein_coding
ENSMUST00000129831 (Sdk1-004) 141241918-141582504 retained_intron
ENSMUST00000145908 (Sdk1-003) 141373654-141955329 retained_intron
ENSMUSG00000056493 (Foxk1)
forkhead box K1 		ENSMUST00000072837 (Foxk1-201) 142401497-142462014 protein_coding
ENSMUSG00000083382 (Gm6433)
predicted gene 6433 		ENSMUST00000118634 (Gm6433-001) 141267581-141268455 processed_pseudogene
ENSMUSG00000084934 (Gm16035)
predicted gene 16035 		ENSMUST00000153879 (Gm16035-001) 141373179-141380926 antisense
ENSMUSG00000085540 (Gm16036)
predicted gene 16036 		ENSMUST00000150385 (Gm16036-001) 141595985-141616002 antisense
ENSMUSG00000097947 (Gm26970)
predicted gene, 26970 		ENSMUST00000182990 (Gm26970-001) 142283106-142284069 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MA_0001ENSG00000146555ENST00000389531ENST00000404826ENST00000426596ENST00000466611ENST00000467827ENST00000476701ENST00000478527ENST00000481856ENST00000484011ENST00000615806ENSG00000164916ENST00000328914ENST00000460979ENST00000496023ENSG00000211544ENST00000390210ENSG00000224593ENST00000430569ENST00000439177ENSG00000236510ENST00000427920ENSG00000236708ENST00000437354ENSG00000242802ENST00000348624ENST00000401897ENST00000469614ENST00000477454ENST00000477680ENST00000490487ENST00000491375ENST00000496303CIL_0002MA_0002ENSMUSG00000039683ENSMUST00000074546ENSMUST00000085774ENSMUST00000129831ENSMUST00000145908ENSMUSG00000056493ENSMUST00000072837ENSMUSG00000083382ENSMUST00000118634ENSMUSG00000084934ENSMUST00000153879ENSMUSG00000085540ENSMUST00000150385ENSMUSG00000097947ENSMUST00000182990
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MA_0001ENSG00000146555ENST00000389531ENST00000404826ENST00000466611ENST00000476701ENST00000615806ENSG00000164916ENST00000328914ENSG00000211544ENST00000390210ENSG00000224593ENST00000430569ENST00000439177ENSG00000236510ENST00000427920ENSG00000236708ENST00000437354ENSG00000242802ENST00000348624CIL_0002MA_0002ENSMUSG00000039683ENSMUST00000074546ENSMUST00000085774ENSMUST00000145908ENSMUSG00000056493ENSMUST00000072837ENSMUSG00000083382ENSMUST00000118634ENSMUSG00000084934ENSMUST00000153879ENSMUSG00000085540ENSMUST00000150385ENSMUSG00000097947ENSMUST00000182990
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146555 ENST00000389531 1.949±0.00 1.001±0.00 N/A 0.065±0.00 1.820±0.00 1.300±0.00 0.428±0.22 0.498±0.48 0.429±0.39 0.487±0.00 0.226±0.00 0.925±0.13 1.316±0.31 1.281±0.43
ENST00000404826 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A 0.483±0.00
ENST00000426596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466611 N/A N/A N/A 0.299±0.00 0.519±0.00 N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476701 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 1.104±0.00 N/A N/A 1.659±0.00 3.110±0.34
ENST00000478527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615806 1.957±0.00 0.994±0.00 N/A 0.392±0.00 0.846±0.72 1.051±0.00 0.392±0.00 N/A N/A N/A 0.125±0.06 0.935±0.45 1.130±0.46 0.725±0.27
ENSG00000164916 ENST00000328914 7.042±0.00 11.948±0.00 0.522±0.00 2.940±0.98 4.381±2.47 2.962±1.67 2.657±1.97 4.500±0.00 2.131±0.56 3.610±2.59 5.579±4.84 6.361±2.65 1.950±0.97 4.430±1.55
ENST00000460979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000211544 ENST00000390210 N/A 1.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224593 ENST00000430569 N/A 0.122±0.00 0.161±0.00 0.560±0.00 2.330±0.00 1.727±0.00 0.220±0.00 0.143±0.00 N/A 1.591±0.00 N/A 0.338±0.24 N/A 0.615±0.34
ENST00000439177 N/A 0.050±0.00 0.677±0.00 0.146±0.09 0.932±0.00 1.896±0.00 0.161±0.13 N/A N/A 5.179±0.00 N/A 2.460±0.00 0.108±0.00 0.810±0.00
ENSG00000236510 ENST00000427920 N/A 0.016±0.00 N/A 0.035±0.00 0.234±0.00 0.246±0.17 N/A N/A 0.391±0.00 N/A N/A 0.021±0.00 N/A 0.038±0.00
ENSG00000236708 ENST00000437354 0.157±0.00 0.380±0.00 N/A 0.051±0.00 N/A 0.254±0.08 N/A N/A 0.296±0.00 0.168±0.06 N/A 0.061±0.01 0.051±0.00 0.093±0.04
ENSG00000242802 ENST00000348624 11.760±0.00 17.923±0.00 N/A N/A 12.134±0.00 N/A N/A 5.329±4.75 4.473±0.00 N/A N/A 12.327±1.84 9.316±1.54 9.407±2.32
ENST00000401897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039683 ENSMUST00000074546 2.078±0.44 2.681±0.29 0.755±0.26 0.749±0.35 1.148±0.56 1.930±0.42 0.115±0.04 0.184±0.07 0.140±0.05 0.619±0.13 0.075±0.03 1.857±1.02 1.113±0.99 1.337±0.51
ENSMUST00000085774 0.566±0.31 1.064±0.22 0.588±0.40 0.716±0.21 0.801±0.06 0.963±0.15 0.053±0.01 0.118±0.02 0.070±0.02 0.215±0.07 0.054±0.02 1.135±0.35 0.210±0.15 0.167±0.02
ENSMUST00000129831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145908 N/A N/A N/A N/A N/A N/A 0.256±0.00 0.402±0.02 N/A N/A N/A 1.861±0.00 N/A 1.033±0.00
ENSMUSG00000056493 ENSMUST00000072837 6.549±1.67 6.808±0.58 4.376±0.02 5.633±1.28 8.864±3.99 11.766±0.53 3.104±0.39 4.879±0.16 2.609±0.84 9.146±2.87 4.105±0.59 11.367±2.49 5.756±4.97 6.234±2.52
ENSMUSG00000083382 ENSMUST00000118634 1.041±0.37 0.245±0.08 0.182±0.02 0.053±0.00 0.581±0.31 0.238±0.13 0.212±0.08 0.277±0.21 0.384±0.80 0.244±0.10 0.119±0.08 1.109±0.81 0.155±0.05 0.207±0.05
ENSMUSG00000084934 ENSMUST00000153879 0.168±0.00 N/A 0.130±0.00 N/A N/A 0.623±0.25 N/A 0.749±0.19 0.908±0.48 0.144±0.00 N/A 0.457±0.05 0.119±0.06 N/A
ENSMUSG00000085540 ENSMUST00000150385 0.039±0.00 N/A 0.014±0.00 0.031±0.00 N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.271±0.00 0.020±0.00 0.035±0.00
ENSMUSG00000097947 ENSMUST00000182990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A

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