C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404826 SDK1-001 ENSG00000146555 9606 + 7:3301448-4269000 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungTestisENST00000404826
Transcript ID Brain Lung Testis
ENST00000404826 0.056±0.00 0.531±0.00 0.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M9 CIL_0002M9_0001 CGP 7:2906141-4269000
CIL_0002MA CIL_0002MA_0001 CGP 7:3301448-4771443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085774 Sdk1-001 protein_coding Mus_musculus 0 6809
ENSMUST00000074546 Sdk1-002 protein_coding Mus_musculus 0 6065
ENSMUST00000145908 Sdk1-003 retained_intron Mus_musculus 0 1301
ENSMUST00000129831 Sdk1-004 retained_intron Mus_musculus 0 331

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