C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002M9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198286-ENSG00000146555 CGP 9606 7:2906141-4269000
GeneTranscriptPositionBiotype
ENSG00000146555 (SDK1)
sidekick cell adhesion molecule 1 		ENST00000389531 (SDK1-004) 3301587-4266408 protein_coding
ENST00000404826 (SDK1-001) 3301448-4269000 protein_coding
ENST00000426596 (SDK1-006) 3950920-3958287 protein_coding
ENST00000466611 (SDK1-003) 4227155-4266408 processed_transcript
ENST00000467827 (SDK1-009) 4232887-4237671 retained_intron
ENST00000476701 (SDK1-002) 4129685-4269000 retained_intron
ENST00000478527 (SDK1-005) 3950921-3952109 retained_intron
ENST00000481856 (SDK1-008) 4174222-4179258 processed_transcript
ENST00000484011 (SDK1-007) 3971466-3974758 retained_intron
ENST00000615806 (SDK1-201) 3301587-4269000 protein_coding
ENSG00000198286 (CARD11)
caspase recruitment domain family, member 11 		ENST00000355508 (CARD11-013) 2919480-2930060 protein_coding
ENST00000356408 (CARD11-012) 2947576-3043845 protein_coding
ENST00000396946 (CARD11-011) 2906141-3043945 protein_coding
ENST00000480332 (CARD11-014) 2917290-2923040 retained_intron
ENSG00000201794 (RN7SKP130)
RNA, 7SK small nuclear pseudogene 130 		ENST00000364924 (RN7SKP130-201) 2999094-2999394 misc_RNA
ENSG00000211544 (AC069286.1)
 ENST00000390210 (AC069286.1-201) 3419067-3419149 miRNA
ENSG00000217455 (AC091801.1)
 ENST00000402115 (AC091801.1-002) 3140500-3158571 lincRNA
ENST00000403226 (AC091801.1-003) 3140917-3158571 lincRNA
ENST00000404626 (AC091801.1-001) 3146992-3174654 lincRNA
ENST00000457522 (AC091801.1-004) 3140920-3158255 lincRNA
ENST00000458648 (AC091801.1-005) 3140234-3158255 lincRNA
ENSG00000224593 (RP11-30B1.1)
 ENST00000430569 (RP11-30B1.1-001) 3338126-3338601 transcribed_processed_pseudogene
ENST00000439177 (RP11-30B1.1-002) 3337889-3338489 processed_transcript
ENSG00000228334 (AC024028.1)
 ENST00000437145 (AC024028.1-001) 3083252-3086421 lincRNA
ENSG00000231892 (AC073316.2)
 ENST00000414126 (AC073316.2-001) 3196626-3198256 lincRNA
ENSG00000236510 (AC011284.3)
 ENST00000427920 (AC011284.3-001) 3642815-3643784 antisense
ENSG00000236708 (AC073316.1)
 ENST00000437354 (AC073316.1-001) 3264032-3302452 antisense
ENSG00000237286 (AC004906.3)
 ENST00000423194 (AC004906.3-001) 2944035-2947091 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002M9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036526-ENSMUSG00000039683 CGP 10090 5:140872999-142215586
GeneTranscriptPositionBiotype
ENSMUSG00000036526 (Card11)
caspase recruitment domain family, member 11 		ENSMUST00000085786 (Card11-201) 140872999-141000596 protein_coding
ENSMUSG00000039683 (Sdk1)
sidekick homolog 1 (chicken) 		ENSMUST00000074546 (Sdk1-002) 141856787-142213194 protein_coding
ENSMUST00000085774 (Sdk1-001) 141241490-142215586 protein_coding
ENSMUST00000129831 (Sdk1-004) 141241918-141582504 retained_intron
ENSMUST00000145908 (Sdk1-003) 141373654-141955329 retained_intron
ENSMUSG00000083382 (Gm6433)
predicted gene 6433 		ENSMUST00000118634 (Gm6433-001) 141267581-141268455 processed_pseudogene
ENSMUSG00000084934 (Gm16035)
predicted gene 16035 		ENSMUST00000153879 (Gm16035-001) 141373179-141380926 antisense
ENSMUSG00000085540 (Gm16036)
predicted gene 16036 		ENSMUST00000150385 (Gm16036-001) 141595985-141616002 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M9_0001ENSG00000146555ENST00000389531ENST00000404826ENST00000426596ENST00000466611ENST00000467827ENST00000476701ENST00000478527ENST00000481856ENST00000484011ENST00000615806ENSG00000198286ENST00000355508ENST00000356408ENST00000396946ENST00000480332ENSG00000201794ENST00000364924ENSG00000211544ENST00000390210ENSG00000217455ENST00000402115ENST00000403226ENST00000404626ENST00000457522ENST00000458648ENSG00000224593ENST00000430569ENST00000439177ENSG00000228334ENST00000437145ENSG00000231892ENST00000414126ENSG00000236510ENST00000427920ENSG00000236708ENST00000437354ENSG00000237286ENST00000423194CIL_0002M9_0002ENSMUSG00000036526ENSMUST00000085786ENSMUSG00000039683ENSMUST00000074546ENSMUST00000085774ENSMUST00000129831ENSMUST00000145908ENSMUSG00000083382ENSMUST00000118634ENSMUSG00000084934ENSMUST00000153879ENSMUSG00000085540ENSMUST00000150385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M9_0001ENSG00000146555ENST00000389531ENST00000404826ENST00000466611ENST00000476701ENST00000615806ENSG00000198286ENST00000355508ENST00000356408ENST00000396946ENSG00000201794ENST00000364924ENSG00000211544ENST00000390210ENSG00000217455ENST00000402115ENST00000403226ENST00000404626ENST00000457522ENST00000458648ENSG00000224593ENST00000430569ENST00000439177ENSG00000228334ENST00000437145ENSG00000231892ENST00000414126ENSG00000236510ENST00000427920ENSG00000236708ENST00000437354ENSG00000237286ENST00000423194CIL_0002M9_0002ENSMUSG00000036526ENSMUST00000085786ENSMUSG00000039683ENSMUST00000074546ENSMUST00000085774ENSMUST00000145908ENSMUSG00000083382ENSMUST00000118634ENSMUSG00000084934ENSMUST00000153879ENSMUSG00000085540ENSMUST00000150385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146555 ENST00000389531 1.949±0.00 1.001±0.00 N/A 0.065±0.00 1.820±0.00 1.300±0.00 0.428±0.22 0.498±0.48 0.429±0.39 0.487±0.00 0.226±0.00 0.925±0.13 1.316±0.31 1.281±0.43
ENST00000404826 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A 0.483±0.00
ENST00000426596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466611 N/A N/A N/A 0.299±0.00 0.519±0.00 N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476701 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 1.104±0.00 N/A N/A 1.659±0.00 3.110±0.34
ENST00000478527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615806 1.957±0.00 0.994±0.00 N/A 0.392±0.00 0.846±0.72 1.051±0.00 0.392±0.00 N/A N/A N/A 0.125±0.06 0.935±0.45 1.130±0.46 0.725±0.27
ENSG00000198286 ENST00000355508 N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A
ENST00000356408 N/A N/A N/A N/A N/A N/A N/A N/A 1.529±0.00 1.151±0.00 N/A N/A N/A N/A
ENST00000396946 0.139±0.00 11.159±0.00 0.146±0.00 0.197±0.00 0.510±0.00 0.114±0.00 0.044±0.00 0.394±0.00 0.188±0.02 2.470±2.19 0.154±0.00 4.573±5.44 0.416±0.18 0.211±0.00
ENST00000480332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201794 ENST00000364924 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A
ENSG00000211544 ENST00000390210 N/A 1.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217455 ENST00000402115 N/A N/A N/A 0.073±0.00 0.147±0.00 N/A N/A N/A N/A N/A N/A 0.251±0.18 0.094±0.04 N/A
ENST00000403226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 0.069±0.00 0.098±0.00
ENST00000404626 N/A N/A N/A 0.039±0.00 0.050±0.00 0.034±0.00 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A
ENST00000457522 N/A N/A N/A 0.054±0.00 N/A 0.161±0.00 N/A N/A N/A N/A N/A 0.672±0.00 N/A N/A
ENST00000458648 0.128±0.00 N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A
ENSG00000224593 ENST00000430569 N/A 0.122±0.00 0.161±0.00 0.560±0.00 2.330±0.00 1.727±0.00 0.220±0.00 0.143±0.00 N/A 1.591±0.00 N/A 0.338±0.24 N/A 0.615±0.34
ENST00000439177 N/A 0.050±0.00 0.677±0.00 0.146±0.09 0.932±0.00 1.896±0.00 0.161±0.13 N/A N/A 5.179±0.00 N/A 2.460±0.00 0.108±0.00 0.810±0.00
ENSG00000228334 ENST00000437145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.10
ENSG00000231892 ENST00000414126 N/A N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A 0.259±0.00 N/A N/A 0.118±0.05 0.301±0.23
ENSG00000236510 ENST00000427920 N/A 0.016±0.00 N/A 0.035±0.00 0.234±0.00 0.246±0.17 N/A N/A 0.391±0.00 N/A N/A 0.021±0.00 N/A 0.038±0.00
ENSG00000236708 ENST00000437354 0.157±0.00 0.380±0.00 N/A 0.051±0.00 N/A 0.254±0.08 N/A N/A 0.296±0.00 0.168±0.06 N/A 0.061±0.01 0.051±0.00 0.093±0.04
ENSG00000237286 ENST00000423194 N/A N/A N/A 0.364±0.00 N/A N/A N/A N/A 0.095±0.00 N/A N/A 1.560±0.00 N/A 0.892±0.49
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036526 ENSMUST00000085786 0.407±0.38 0.259±0.09 0.374±0.05 0.050±0.02 3.285±2.08 1.179±0.27 0.169±0.12 0.470±0.35 0.100±0.06 5.074±0.78 0.286±0.14 0.928±0.36 0.175±0.12 0.230±0.12
ENSMUSG00000039683 ENSMUST00000074546 2.078±0.44 2.681±0.29 0.755±0.26 0.749±0.35 1.148±0.56 1.930±0.42 0.115±0.04 0.184±0.07 0.140±0.05 0.619±0.13 0.075±0.03 1.857±1.02 1.113±0.99 1.337±0.51
ENSMUST00000085774 0.566±0.31 1.064±0.22 0.588±0.40 0.716±0.21 0.801±0.06 0.963±0.15 0.053±0.01 0.118±0.02 0.070±0.02 0.215±0.07 0.054±0.02 1.135±0.35 0.210±0.15 0.167±0.02
ENSMUST00000129831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145908 N/A N/A N/A N/A N/A N/A 0.256±0.00 0.402±0.02 N/A N/A N/A 1.861±0.00 N/A 1.033±0.00
ENSMUSG00000083382 ENSMUST00000118634 1.041±0.37 0.245±0.08 0.182±0.02 0.053±0.00 0.581±0.31 0.238±0.13 0.212±0.08 0.277±0.21 0.384±0.80 0.244±0.10 0.119±0.08 1.109±0.81 0.155±0.05 0.207±0.05
ENSMUSG00000084934 ENSMUST00000153879 0.168±0.00 N/A 0.130±0.00 N/A N/A 0.623±0.25 N/A 0.749±0.19 0.908±0.48 0.144±0.00 N/A 0.457±0.05 0.119±0.06 N/A
ENSMUSG00000085540 ENSMUST00000150385 0.039±0.00 N/A 0.014±0.00 0.031±0.00 N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.271±0.00 0.020±0.00 0.035±0.00

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