C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C7orf55-LUC7L2 readthrough
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146963 C7orf55-LUC7L2 9606 + 7:139340359-139423457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263545 C7orf55-LUC7L2-201 139371412-139423457 protein_coding
  ENST00000354926 C7orf55-LUC7L2-001 139359908-139423452 protein_coding
  ENST00000435096 C7orf55-LUC7L2-008 139359908-139374555 retained_intron
  ENST00000456182 C7orf55-LUC7L2-003 139359912-139423151 nonsense_mediated_decay
  ENST00000463912 C7orf55-LUC7L2-004 139374673-139412825 retained_intron
  ENST00000482860 C7orf55-LUC7L2-007 139416125-139423156 processed_transcript
  ENST00000498518 C7orf55-LUC7L2-006 139375204-139423201 retained_intron
  ENST00000541170 C7orf55-LUC7L2-005 139340359-139422511 protein_coding
  ENST00000608368 C7orf55-LUC7L2-009 139359512-139398624 nonsense_mediated_decay
  ENST00000619796 C7orf55-LUC7L2-202 139359846-139423457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263545ENST00000354926ENST00000435096ENST00000456182ENST00000463912ENST00000482860ENST00000498518ENST00000541170
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.316±2.82 N/A N/A
ENST00000354926 6.081±0.00 11.944±0.00 8.449±4.63 5.404±3.19 18.252±0.00 3.715±2.42 13.817±0.00 5.518±0.00 6.914±4.80 7.197±0.00 13.121±5.29 9.044±2.92 18.734±0.00
ENST00000435096 N/A N/A N/A N/A N/A N/A 24.229±0.00 N/A N/A N/A N/A N/A N/A
ENST00000456182 15.198±0.00 16.303±0.00 11.519±0.00 8.384±0.00 9.070±0.00 5.691±0.00 N/A 5.207±0.00 10.463±0.00 10.064±0.00 26.961±6.66 12.482±8.41 27.923±6.67
ENST00000463912 N/A N/A N/A N/A N/A N/A N/A 3.118±0.00 N/A N/A N/A N/A N/A
ENST00000482860 N/A N/A N/A N/A N/A 1.284±0.00 2.399±0.00 N/A N/A 1.681±0.00 N/A N/A N/A
ENST00000498518 N/A 5.209±0.00 2.822±0.00 3.800±0.00 3.060±0.00 N/A N/A N/A 5.149±0.00 N/A N/A N/A N/A
ENST00000541170 N/A N/A N/A N/A 3.342±0.00 N/A N/A N/A N/A N/A N/A N/A 15.927±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QB CIL_0002QB_0001 CGP 7:139230356-139346319
CIL_00030D CIL_00030D_0001 CGP 7:139339457-139423457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019765 C7orf55-LUC7L2 readthrough protein_coding Danio_rerio
ENSMUSG00000029823 Luc7l2 LUC7-like 2 (S. cerevisiae) protein_coding Mus_musculus

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