C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C7orf55-LUC7L2 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354926 C7orf55-LUC7L2-001 ENSG00000146963 9606 + 7:139359908-139423452 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354926
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354926 6.081±0.00 11.944±0.00 8.449±4.63 5.404±3.19 18.252±0.00 3.715±2.42 13.817±0.00 5.518±0.00 6.914±4.80 7.197±0.00 13.121±5.29 9.044±2.92 18.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QB CIL_0002QB_0001 CGP 7:139230356-139346319
CIL_00030D CIL_00030D_0001 CGP 7:139339457-139423457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057692 Luc7l2-001 protein_coding Mus_musculus 0 2447
ENSMUST00000161227 Luc7l2-002 protein_coding Mus_musculus 0 2124
ENSMUST00000162386 Luc7l2-005 nonsense_mediated_decay Mus_musculus 0 1947
ENSMUST00000160511 Luc7l2-007 nonsense_mediated_decay Mus_musculus 0 1753
ENSMUST00000161538 Luc7l2-003 protein_coding Mus_musculus 0 1506
ENSMUST00000118402 Gm11889-001 processed_pseudogene Mus_musculus 0 1389
ENSMUST00000160430 Luc7l2-012 protein_coding Mus_musculus 0 1373
ENSMUST00000163047 Luc7l2-004 protein_coding Mus_musculus 0 1182
ENSMUST00000159936 Luc7l2-010 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000160582 Luc7l2-006 processed_transcript Mus_musculus 0 241

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