C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147133 TAF1 9606 + X:71366239-71532374 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276072 TAF1-008 71366305-71464046 protein_coding
  ENST00000373775 TAF1-014 71406679-71530361 nonsense_mediated_decay
  ENST00000373790 TAF1-009 71366264-71466005 protein_coding
  ENST00000423759 TAF1-201 71366239-71466004 protein_coding
  ENST00000437147 TAF1-010 71406679-71530361 nonsense_mediated_decay
  ENST00000461157 TAF1-022 71459592-71460960 processed_transcript
  ENST00000461764 TAF1-021 71423158-71530361 processed_transcript
  ENST00000462588 TAF1-012 71423158-71530355 processed_transcript
  ENST00000463163 TAF1-007 71406646-71416737 protein_coding
  ENST00000467309 TAF1-016 71459670-71532374 processed_transcript
  ENST00000468167 TAF1-011 71423158-71530361 processed_transcript
  ENST00000472567 TAF1-005 71387086-71388301 retained_intron
  ENST00000474917 TAF1-020 71388589-71389630 retained_intron
  ENST00000478305 TAF1-006 71387310-71389773 retained_intron
  ENST00000482544 TAF1-018 71458273-71466504 processed_transcript
  ENST00000483365 TAF1-019 71377007-71377985 retained_intron
  ENST00000483985 TAF1-017 71394108-71406746 protein_coding
  ENST00000485087 TAF1-013 71423158-71530360 processed_transcript
  ENST00000492404 TAF1-015 71423978-71464313 processed_transcript
  ENST00000497222 TAF1-023 71492312-71530525 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276072ENST00000373790ENST00000423759ENST00000482544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276072 N/A N/A 2.408±0.00 N/A 2.464±0.00 1.968±0.00 1.068±0.00 N/A 1.276±0.00 5.564±0.00 1.488±0.00 2.397±0.00 N/A N/A
ENST00000373790 1.792±0.00 2.507±0.00 0.987±0.00 0.708±0.00 1.556±0.63 1.618±0.05 N/A 1.328±0.00 0.872±0.35 0.967±0.00 N/A 1.549±0.52 2.081±0.36 1.338±0.00
ENST00000423759 N/A N/A N/A 0.649±0.13 1.040±0.00 N/A N/A 0.531±0.00 0.642±0.47 N/A 0.746±0.00 1.402±0.94 0.942±0.30 0.672±0.00
ENST00000482544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.380±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0001 CGP X:71301734-71532374
CIL_0000TR CIL_0000TR_0001 CGP X:71366239-71575897

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA:IEA transcription factor TFIID complex
GO:0006352 ISS:IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006974 IC cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016573 IEA histone acetylation
GO:0017025 IPI TBP-class protein binding
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0018107 IDA peptidyl-threonine phosphorylation
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043565 ISS sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046777 TAS protein autophosphorylation
GO:0051123 ISS RNA polymerase II transcriptional preinitiation complex assembly
GO:0060261 ISS positive regulation of transcription initiation from RNA polymerase II promoter
GO:0070577 IDA lysine-acetylated histone binding
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035330 taf1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000031314 Taf1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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