C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031314 Taf1 10090 + X:101532734-101601789 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000101341 Taf1-201 101532741-101601789 protein_coding
  ENSMUST00000118878 Taf1-001 101532734-101601034 protein_coding
  ENSMUST00000129487 Taf1-003 101556310-101601034 retained_intron
  ENSMUST00000140470 Taf1-004 101590547-101600571 processed_transcript
  ENSMUST00000143908 Taf1-005 101532759-101601034 nonsense_mediated_decay
  ENSMUST00000149274 Taf1-002 101532759-101549199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118878ENSMUST00000129487ENSMUST00000140470ENSMUST00000143908ENSMUST00000149274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118878 1.765±0.75 0.498±0.31 2.135±0.02 4.698±2.40 0.568±0.29 0.794±0.28 0.749±0.17 1.182±0.53 1.370±1.04 1.897±0.21 1.079±0.20 2.490±2.54 4.036±1.46 0.898±0.34
ENSMUST00000129487 0.784±0.02 0.703±0.23 4.300±0.20 3.378±0.50 1.145±0.33 1.061±0.35 0.690±0.10 0.758±0.30 2.386±1.75 1.875±0.86 0.853±0.26 1.474±1.10 3.423±0.92 0.525±0.11
ENSMUST00000140470 N/A 0.889±0.00 N/A 46.025±0.00 N/A N/A N/A N/A N/A N/A N/A 29.793±0.00 28.387±0.94 8.135±0.00
ENSMUST00000143908 0.608±0.00 0.789±0.36 1.135±0.00 N/A 0.544±0.06 0.572±0.00 0.546±0.00 0.478±0.00 0.505±0.24 N/A 0.279±0.02 1.316±0.79 2.591±0.89 N/A
ENSMUST00000149274 1.666±0.55 0.619±0.30 N/A N/A 1.014±0.40 1.280±0.31 0.605±0.00 1.009±0.33 0.409±0.13 1.988±0.33 N/A 1.058±0.29 N/A 0.770±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0002 CGP X:101449088-101601789
CIL_0000TR CIL_0000TR_0002 CGP X:101532734-101684351

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004402 IDA histone acetyltransferase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0007049 IEA cell cycle
GO:0016573 IDA histone acetylation
GO:0045120 IDA pronucleus
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035330 taf1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000122728 TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like protein_coding Homo_sapiens
ENSG00000147133 TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa protein_coding Homo_sapiens

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