C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423759 TAF1-201 ENSG00000147133 9606 + X:71366239-71466004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverMuscleOvaryPlacentaTestisENST00000423759
Transcript ID Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENST00000423759 0.649±0.13 1.040±0.00 0.531±0.00 0.642±0.47 0.746±0.00 1.402±0.94 0.942±0.30 0.672±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0001 CGP X:71301734-71532374
CIL_0000TR CIL_0000TR_0001 CGP X:71366239-71575897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA:IEA transcription factor TFIID complex
GO:0006352 ISS:IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006974 IC cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016573 IEA histone acetylation
GO:0017025 IPI TBP-class protein binding
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0018107 IDA peptidyl-threonine phosphorylation
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043565 ISS sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046777 TAS protein autophosphorylation
GO:0051123 ISS RNA polymerase II transcriptional preinitiation complex assembly
GO:0060261 ISS positive regulation of transcription initiation from RNA polymerase II promoter
GO:0070577 IDA lysine-acetylated histone binding
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118878 Taf1-001 protein_coding Mus_musculus 0 6955
ENSMUST00000143908 Taf1-005 nonsense_mediated_decay Mus_musculus 0 6848
ENSMUST00000101341 Taf1-201 protein_coding Mus_musculus 0 5821
ENSMUST00000129487 Taf1-003 retained_intron Mus_musculus 0 3936
ENSMUST00000149274 Taf1-002 protein_coding Mus_musculus 0 2739
ENSDART00000130225 taf1-202 protein_coding Danio_rerio 0 1995
ENSDART00000051196 taf1-001 protein_coding Danio_rerio 0 857
ENSMUST00000140470 Taf1-004 processed_transcript Mus_musculus 0 791

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