C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377307 ARHGAP39-002 ENSG00000147799 9606 - 8:144529179-144605699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000377307
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000377307 0.484±0.00 1.438±1.04 0.494±0.15 0.312±0.08 0.510±0.00 2.083±0.00 0.168±0.00 1.193±0.00 3.484±3.01 0.984±0.37 13.811±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064F CIL_00064F_0002 CGP 8:144525733-144605816
CIL_0000VV CIL_0000VV_0001 CGP 8:144529179-144756417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036176 Arhgap39-002 protein_coding Mus_musculus 0 3271
ENSMUST00000177011 Arhgap39-003 retained_intron Mus_musculus 0 2235
ENSMUST00000077821 Arhgap39-001 protein_coding Mus_musculus 0 2235
ENSDART00000113684 arhgap39-201 protein_coding Danio_rerio 0 555

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