C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000276826 ARHGAP39-001 ENSG00000147799 9606 - 8:144529179-144605816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000276826
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000276826 0.445±0.00 0.211±0.00 5.522±4.51 0.894±0.00 0.527±0.44 0.055±0.00 0.114±0.00 0.965±0.91 0.039±0.00 0.363±0.00 0.153±0.00 11.519±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064F CIL_00064F_0002 CGP 8:144525733-144605816
CIL_0000VV CIL_0000VV_0001 CGP 8:144529179-144756417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077821 Arhgap39-001 protein_coding Mus_musculus 0 3121
ENSMUST00000177011 Arhgap39-003 retained_intron Mus_musculus 0 2237
ENSMUST00000036176 Arhgap39-002 protein_coding Mus_musculus 0 2235
ENSDART00000113684 arhgap39-201 protein_coding Danio_rerio 0 1083

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