C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L7a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148303 RPL7A 9606 + 9:133348214-133351426 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315731 RPL7A-005 133348922-133351426 protein_coding
  ENST00000323345 RPL7A-009 133348214-133351426 protein_coding
  ENST00000426651 RPL7A-004 133348252-133350318 protein_coding
  ENST00000463740 RPL7A-001 133348218-133351426 processed_transcript
  ENST00000468019 RPL7A-003 133348252-133351372 processed_transcript
  ENST00000485706 RPL7A-006 133348922-133350383 processed_transcript
  ENST00000489392 RPL7A-007 133348937-133351385 processed_transcript
  ENST00000492798 RPL7A-008 133350850-133351413 processed_transcript
  ENST00000496554 RPL7A-002 133348218-133350695 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315731ENST00000323345ENST00000468019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315731 275.424±0.00 415.606±0.00 N/A 64.374±0.00 227.852±0.00 336.505±0.00 75.555±0.00 155.984±0.00 80.881±0.00 266.148±0.00 139.667±0.00 458.098±0.00 N/A 222.966±0.00
ENST00000323345 321.690±0.00 423.980±0.00 24.217±0.00 53.256±5.53 161.222±77.90 278.729±194.74 45.348±14.71 88.567±16.59 84.760±9.61 94.474±25.71 94.717±15.33 1005.401±969.31 1056.270±419.92 300.899±15.14
ENST00000468019 N/A N/A N/A 45.663±0.00 N/A N/A 41.394±0.00 110.274±0.00 82.512±0.00 344.985±0.00 150.240±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DH CIL_0006DH_0001 CGP 9:133338323-133351426
CIL_0006DK CIL_0006DK_0001 CGP 9:133348214-133356676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0042254 IEA ribosome biogenesis
GO:0042788 IDA polysomal ribosome
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019230 rpl7a ribosomal protein L7a protein_coding Danio_rerio
ENSMUSG00000062647 Rpl7a ribosomal protein L7A protein_coding Mus_musculus
ENSMUSG00000062874 Gm4978 predicted gene 4978 protein_coding Mus_musculus
ENSMUSG00000068579 Rpl7a-ps3 ribosomal protein L7A, pseudogene 3 protein_coding Mus_musculus
ENSMUSG00000070778 Rpl7a-ps8 ribosomal protein L7A, pseudogene 8 protein_coding Mus_musculus
ENSMUSG00000071052 Rpl7a-ps5 ribosomal protein L7A, pseudogene 5 protein_coding Mus_musculus
ENSMUSG00000078177 Gm4877 predicted gene 4877 protein_coding Mus_musculus
ENSMUSG00000098640 Gm14214 predicted gene 14214 protein_coding Mus_musculus

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