C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315731 RPL7A-005 ENSG00000148303 9606 + 9:133348922-133351426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000315731
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000315731 275.424±0.00 415.606±0.00 64.374±0.00 227.852±0.00 336.505±0.00 75.555±0.00 155.984±0.00 80.881±0.00 266.148±0.00 139.667±0.00 458.098±0.00 222.966±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DH CIL_0006DH_0001 CGP 9:133338323-133351426
CIL_0006DK CIL_0006DK_0001 CGP 9:133348214-133356676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005840 IEA ribosome
GO:0042254 IEA ribosome biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119253 Gm13975-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 207
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 207
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 207
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 207
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 207
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 207
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 4.2039e-45 185
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 4.2039e-45 185
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 5.04467e-44 182
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 4.00001e-40 169
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 4.00001e-40 169
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 7e-28 128
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 2e-27 126
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.00000000000005 82

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