C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323345 RPL7A-009 ENSG00000148303 9606 + 9:133348214-133351426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323345 321.690±0.00 423.980±0.00 24.217±0.00 53.256±5.53 161.222±77.90 278.729±194.74 45.348±14.71 88.567±16.59 84.760±9.61 94.474±25.71 94.717±15.33 1005.401±969.31 1056.270±419.92 300.899±15.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DH CIL_0006DH_0001 CGP 9:133338323-133351426
CIL_0006DK CIL_0006DK_0001 CGP 9:133348214-133356676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0042254 IEA ribosome biogenesis
GO:0042788 IDA polysomal ribosome
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 1005
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 976
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 970
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 966
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 965
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 928
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 926
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 909
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 905
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 898
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 824
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 797
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 745
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000119253 Gm13975-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 501
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 7.00649e-44 182
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.00000000000007 82

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