C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ventral anterior homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148704 VAX1 9606 - 10:117128521-117138301 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277905 VAX1-002 117128521-117138301 protein_coding
  ENST00000369206 VAX1-001 117133290-117138056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverOvaryTestisENST00000277905ENST00000369206
Transcript ID Adipose Adrenal Brain Breast Liver Ovary Testis
ENST00000277905 0.010±0.00 0.003±0.00 0.057±0.01 0.003±0.00 0.052±0.00 N/A 0.120±0.00
ENST00000369206 N/A N/A 0.654±0.36 N/A N/A 0.085±0.00 0.335±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0001 VISTA 10:116794613-117395732
CIL_0007ZF CIL_0007ZF_0001 VISTA 10:116796186-117397238
CIL_0002OL CIL_0002OL_0001 CGP 10:116881482-117138301
CIL_0008H6 CIL_0008H6_0001 VISTA 10:116948553-117549645
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_00019Z CIL_00019Z_0001 CGP 10:117128521-117210299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IEA neuron migration
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0007406 IEA negative regulation of neuroblast proliferation
GO:0007411 IEA axon guidance
GO:0007417 IEA central nervous system development
GO:0007420 IEA brain development
GO:0030154 IEA cell differentiation
GO:0031490 IEA chromatin DNA binding
GO:0035914 IEA skeletal muscle cell differentiation
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0060021 IEA palate development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021916 vax1 ventral anterior homeobox 1 protein_coding Danio_rerio
ENSMUSG00000006270 Vax1 ventral anterior homeobox 1 protein_coding Mus_musculus

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