C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007YJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs841 VISTA 9606 10:116794613-117395732
GeneTranscriptPositionBiotype
ENSG00000148704 (VAX1)
ventral anterior homeobox 1 		ENST00000277905 (VAX1-002) 117128521-117138301 protein_coding
ENST00000369206 (VAX1-001) 117133290-117138056 protein_coding
ENSG00000165650 (PDZD8)
PDZ domain containing 8 		ENST00000334464 (PDZD8-001) 117277274-117375467 protein_coding
ENST00000482496 (PDZD8-002) 117284307-117314235 processed_transcript
ENST00000489302 (PDZD8-003) 117285108-117318978 processed_transcript
ENST00000489491 (PDZD8-004) 117290186-117374481 processed_transcript
ENSG00000186795 (KCNK18)
potassium channel, subfamily K, member 18 		ENST00000334549 (KCNK18-001) 117197489-117210299 protein_coding
ENSG00000234474 (MIR3663HG)
MIR3663 host gene (non-protein coding) 		ENST00000419373 (MIR3663HG-001) 117158656-117169059 lincRNA
ENSG00000236171 (RP11-501J20.3)
 ENST00000452430 (RP11-501J20.3-001) 117196168-117196654 processed_pseudogene
ENSG00000266782 (MIR3663)
microRNA 3663 		ENST00000583207 (MIR3663-201) 117167678-117167774 miRNA
ENSG00000277879 (RP11-129M16.4)
 ENST00000614747 (RP11-129M16.4-001) 117267116-117268668 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007YJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs841 VISTA 10090 19:58832961-59434097
GeneTranscriptPositionBiotype
ENSMUSG00000006270 (Vax1)
ventral anterior homeobox 1 		ENSMUST00000172821 (Vax1-001) 59166187-59170056 protein_coding
ENSMUST00000173710 (Vax1-004) 59166598-59166980 processed_transcript
ENSMUSG00000025092 (Hspa12a)
heat shock protein 12A 		ENSMUST00000066285 (Hspa12a-201) 58795751-58860984 protein_coding
ENSMUSG00000025094 (Slc18a2)
solute carrier family 18 (vesicular monoamine), member 2 		ENSMUST00000026084 (Slc18a2-201) 59260878-59296012 protein_coding
ENSMUSG00000040901 (Kcnk18)
potassium channel, subfamily K, member 18 		ENSMUST00000065204 (Kcnk18-201) 59219648-59237370 protein_coding
ENSMUSG00000041362 (4930506M07Rik)
RIKEN cDNA 4930506M07 gene 		ENSMUST00000047511 (4930506M07Rik-201) 58973358-59076069 protein_coding
ENSMUST00000163821 (4930506M07Rik-202) 58973358-59076069 protein_coding
ENSMUSG00000048029 (Eno4)
enolase 4 		ENSMUST00000054280 (Eno4-201) 58943425-58971419 protein_coding
ENSMUSG00000067038 (Rps12-ps3)
ribosomal protein S12, pseudogene 3 		ENSMUST00000086764 (Rps12-ps3-201) 59322290-59322783 protein_coding
ENSMUSG00000074746 (Pdzd8)
PDZ domain containing 8 		ENSMUST00000099274 (Pdzd8-201) 59296084-59345780 protein_coding
ENSMUSG00000087095 (Emx2os)
Emx2 opposite strand/antisense transcript (non-protein coding) 		ENSMUST00000136990 (Emx2os-001) 59425104-59458635 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YJ_0001ENSG00000148704ENST00000277905ENST00000369206ENSG00000165650ENST00000334464ENST00000482496ENST00000489302ENST00000489491ENSG00000186795ENST00000334549ENSG00000234474ENST00000419373ENSG00000236171ENST00000452430ENSG00000266782ENST00000583207ENSG00000277879ENST00000614747CIL_0007YJ_0002ENSMUSG00000006270ENSMUST00000172821ENSMUST00000173710ENSMUSG00000025092ENSMUST00000066285ENSMUSG00000025094ENSMUST00000026084ENSMUSG00000040901ENSMUST00000065204ENSMUSG00000041362ENSMUST00000047511ENSMUST00000163821ENSMUSG00000048029ENSMUST00000054280ENSMUSG00000067038ENSMUST00000086764ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YJ_0001ENSG00000148704ENST00000277905ENST00000369206ENSG00000165650ENST00000334464ENST00000482496ENST00000489302ENSG00000186795ENST00000334549ENSG00000234474ENST00000419373ENSG00000236171ENST00000452430ENSG00000266782ENST00000583207ENSG00000277879ENST00000614747CIL_0007YJ_0002ENSMUSG00000006270ENSMUST00000172821ENSMUST00000173710ENSMUSG00000025092ENSMUST00000066285ENSMUSG00000025094ENSMUST00000026084ENSMUSG00000040901ENSMUST00000065204ENSMUSG00000041362ENSMUST00000047511ENSMUST00000163821ENSMUSG00000048029ENSMUST00000054280ENSMUSG00000067038ENSMUST00000086764ENSMUSG00000074746ENSMUST00000099274ENSMUSG00000087095ENSMUST00000136990
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148704 ENST00000277905 0.010±0.00 0.003±0.00 N/A 0.057±0.01 0.003±0.00 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A 0.120±0.00
ENST00000369206 N/A N/A N/A 0.654±0.36 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.335±0.12
ENSG00000165650 ENST00000334464 6.517±0.00 2.384±0.00 2.129±0.00 6.354±2.65 2.889±0.25 4.614±0.10 2.208±0.88 5.599±0.75 4.074±0.98 3.640±0.47 1.441±0.71 8.551±4.37 1.958±0.45 9.228±2.76
ENST00000482496 N/A N/A N/A N/A N/A N/A 1.878±0.00 N/A N/A N/A N/A 16.091±0.00 N/A 13.693±0.00
ENST00000489302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.940±0.00
ENST00000489491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186795 ENST00000334549 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 0.045±0.03
ENSG00000234474 ENST00000419373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.417±0.13
ENSG00000236171 ENST00000452430 N/A 0.030±0.00 N/A N/A 0.030±0.00 N/A N/A N/A 0.026±0.00 N/A N/A 0.048±0.00 N/A 0.053±0.00
ENSG00000266782 ENST00000583207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.656±0.00
ENSG00000277879 ENST00000614747 N/A N/A N/A N/A 4.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006270 ENSMUST00000172821 0.028±0.00 0.073±0.02 0.012±0.00 3.772±2.46 N/A N/A N/A 0.038±0.00 0.014±0.00 0.029±0.00 0.122±0.00 0.063±0.01 0.070±0.05 0.236±0.09
ENSMUST00000173710 0.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.345±0.26 0.616±0.00
ENSMUSG00000025092 ENSMUST00000066285 18.538±9.52 13.493±1.78 2.961±0.05 20.962±7.55 8.030±1.42 2.376±0.63 3.094±1.28 6.943±0.93 0.200±0.08 4.582±0.66 0.757±0.27 8.528±3.41 1.661±1.34 2.862±0.44
ENSMUSG00000025094 ENSMUST00000026084 0.171±0.08 6.646±3.78 0.482±0.00 9.610±6.17 0.628±0.35 1.350±0.85 0.487±0.15 0.833±0.38 0.698±0.63 0.383±0.18 0.414±0.05 42.011±20.23 1.209±0.59 0.234±0.21
ENSMUSG00000040901 ENSMUST00000065204 0.010±0.00 0.017±0.00 0.014±0.01 0.016±0.00 N/A N/A N/A 0.026±0.01 0.005±0.00 N/A 0.021±0.00 0.406±0.20 0.203±0.30 0.039±0.01
ENSMUSG00000041362 ENSMUST00000047511 1.570±0.68 0.805±0.29 4.565±0.10 7.430±2.37 1.053±0.21 1.908±0.30 0.484±0.06 1.042±0.41 1.715±1.11 2.688±1.03 0.284±0.08 3.034±3.29 5.928±1.90 1.373±0.27
ENSMUST00000163821 N/A 1.089±0.43 N/A 7.234±1.93 0.801±0.00 N/A 0.199±0.07 N/A N/A N/A N/A N/A 0.904±0.00 0.766±0.29
ENSMUSG00000048029 ENSMUST00000054280 0.083±0.04 0.108±0.04 0.027±0.01 0.607±0.07 0.020±0.00 0.037±0.02 0.099±0.00 0.091±0.02 0.032±0.02 1.202±0.60 0.023±0.00 1.409±0.60 0.145±0.10 14.264±6.17
ENSMUSG00000067038 ENSMUST00000086764 17.676±2.76 116.816±24.91 37.911±5.98 20.617±6.13 13.290±6.56 44.967±34.57 11.130±6.25 31.308±13.76 72.039±46.91 17.780±1.35 11.229±0.90 135.816±51.67 150.586±233.91 28.481±5.98
ENSMUSG00000074746 ENSMUST00000099274 4.347±1.76 11.922±1.53 4.177±0.56 6.652±1.61 5.223±3.50 8.379±2.65 2.063±0.16 3.404±0.85 3.348±0.51 8.691±1.79 1.602±0.12 11.423±4.09 6.235±1.22 22.074±8.44
ENSMUSG00000087095 ENSMUST00000136990 1.040±0.78 0.027±0.02 0.032±0.01 0.683±0.40 0.250±0.01 N/A 0.011±0.01 0.711±0.10 0.005±0.00 0.023±0.01 0.047±0.02 1.099±0.60 0.038±0.04 N/A

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