| Transcript ID | Brain | Ovary | Testis |
|---|---|---|---|
| ENST00000369206 | 0.654±0.36 | 0.085±0.00 | 0.335±0.12 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | ventral anterior homeobox 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000369206  |
VAX1-001 |
ENSG00000148704 |
9606 | - |
10:117133290-117138056  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007YJ | CIL_0007YJ_0001 | VISTA | 10:116794613-117395732 |
| CIL_0007ZF | CIL_0007ZF_0001 | VISTA | 10:116796186-117397238 |
| CIL_0002OL | CIL_0002OL_0001 | CGP | 10:116881482-117138301 |
| CIL_0008H6 | CIL_0008H6_0001 | VISTA | 10:116948553-117549645 |
| CIL_0007KI | CIL_0007KI_0001 | UCNEbase | 10:116961332-118177484 |
| CIL_00019Z | CIL_00019Z_0001 | CGP | 10:117128521-117210299 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000122 | IEA | negative regulation of transcription from RNA polymerase II promoter |
| GO:0001764 | IEA | neuron migration |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | IEA | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | IEA | nucleus |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0007399 | IEA | nervous system development |
| GO:0007406 | IEA | negative regulation of neuroblast proliferation |
| GO:0007411 | IEA | axon guidance |
| GO:0007417 | IEA | central nervous system development |
| GO:0007420 | IEA | brain development |
| GO:0030154 | IEA | cell differentiation |
| GO:0031490 | IEA | chromatin DNA binding |
| GO:0035914 | IEA | skeletal muscle cell differentiation |
| GO:0043010 | IEA | camera-type eye development |
| GO:0043565 | IEA | sequence-specific DNA binding |
| GO:0060021 | IEA | palate development |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000172821
|
Vax1-001 | protein_coding | Mus_musculus | 0 | 1236 |
|
ENSMUST00000037807
|
Vax2-004 | protein_coding | Mus_musculus | 0 | 289 |
|
ENSDART00000031490
|
vax1-001 | protein_coding | Danio_rerio | 0 | 265 |
|
ENSMUST00000173710
|
Vax1-004 | processed_transcript | Mus_musculus | 0 | 239 |
