C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ventral anterior homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000277905 VAX1-002 ENSG00000148704 9606 - 10:117128521-117138301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverTestisENST00000277905
Transcript ID Adipose Adrenal Brain Breast Liver Testis
ENST00000277905 0.010±0.00 0.003±0.00 0.057±0.01 0.003±0.00 0.052±0.00 0.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0001 VISTA 10:116794613-117395732
CIL_0007ZF CIL_0007ZF_0001 VISTA 10:116796186-117397238
CIL_0002OL CIL_0002OL_0001 CGP 10:116881482-117138301
CIL_0008H6 CIL_0008H6_0001 VISTA 10:116948553-117549645
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_00019Z CIL_00019Z_0001 CGP 10:117128521-117210299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172821 Vax1-001 protein_coding Mus_musculus 0 579
ENSMUST00000037807 Vax2-004 protein_coding Mus_musculus 0 211

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