C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 51 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000279281 VPS51-001 ENSG00000149823 9606 + 11:65096159-65111860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000279281
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000279281 16.602±0.00 2.744±0.00 13.753±8.10 16.740±13.45 5.499±3.39 10.601±6.50 4.981±0.00 6.373±4.24 18.514±0.00 42.047±36.08 24.993±4.58 21.363±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O4 CIL_0005O4_0002 CGP 11:65089324-65116384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000145 IEA exocyst
GO:0000775 IEA chromosome, centromeric region
GO:0000938 IDA GARP complex
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006869 IEA lipid transport
GO:0006893 IEA Golgi to plasma membrane transport
GO:0006914 IMP autophagy
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016021 TAS integral component of membrane
GO:0017119 IEA Golgi transport complex
GO:0042147 IDA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159832 Vps51-001 protein_coding Mus_musculus 0 2857
ENSMUST00000025711 Vps51-201 protein_coding Mus_musculus 0 2832
ENSMUST00000159211 Vps51-003 retained_intron Mus_musculus 0 1748
ENSMUST00000160590 Vps51-004 protein_coding Mus_musculus 0 473
ENSMUST00000160519 Vps51-007 retained_intron Mus_musculus 0 302
ENSMUST00000160233 Vps51-006 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000162374 RP23-391B20.4-001 protein_coding Mus_musculus 0 261
ENSDART00000089144 vps51-001 protein_coding Danio_rerio 0 200

Loading