C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 51 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528050 VPS51-016 ENSG00000149823 9606 + 11:65096214-65097158 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungMuscleOvaryENST00000528050
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary
ENST00000528050 18.985±0.00 22.585±0.00 18.100±0.00 20.724±0.00 13.884±0.00 27.907±0.00 11.385±0.00 8.402±0.00 22.564±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O4 CIL_0005O4_0002 CGP 11:65089324-65116384

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160590 Vps51-004 protein_coding Mus_musculus 0 503
ENSMUST00000025711 Vps51-201 protein_coding Mus_musculus 0 473
ENSMUST00000159211 Vps51-003 retained_intron Mus_musculus 0 473
ENSMUST00000159832 Vps51-001 protein_coding Mus_musculus 0 473
ENSMUST00000160233 Vps51-006 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000162374 RP23-391B20.4-001 protein_coding Mus_musculus 0 261
ENSMUST00000160519 Vps51-007 retained_intron Mus_musculus 0 217
ENSDART00000089144 vps51-001 protein_coding Danio_rerio 1e-18 97

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