C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bicaudal D homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151746 BICD1 9606 + 12:32106835-32383633 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000281474 BICD1-002 32107229-32377877 protein_coding
  ENST00000395758 BICD1-003 32107252-32377923 nonsense_mediated_decay
  ENST00000547680 BICD1-008 32328402-32333065 protein_coding
  ENST00000548411 BICD1-001 32107151-32383633 protein_coding
  ENST00000550207 BICD1-007 32106885-32108329 protein_coding
  ENST00000551086 BICD1-006 32107296-32108806 protein_coding
  ENST00000551848 BICD1-005 32106835-32108796 protein_coding
  ENST00000552160 BICD1-004 32334517-32338930 protein_coding
  ENST00000552226 BICD1-009 32337499-32339120 retained_intron
  ENST00000614004 BICD1-010 32367534-32368062 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281474ENST00000395758ENST00000548411ENST00000550207ENST00000551848ENST00000552160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281474 N/A 0.847±0.00 N/A N/A 0.885±0.00 N/A 0.403±0.00 N/A N/A 0.707±0.00 N/A 3.581±0.00 0.431±0.00 0.706±0.29
ENST00000395758 0.299±0.00 N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A 0.355±0.00 1.822±0.00 2.883±0.00 N/A
ENST00000548411 0.247±0.00 0.436±0.00 0.401±0.00 2.730±0.14 0.561±0.00 0.315±0.00 0.179±0.01 N/A 0.307±0.28 0.694±0.33 0.261±0.06 1.373±0.70 0.482±0.10 0.395±0.14
ENST00000550207 N/A N/A 1.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.448±0.00 N/A N/A
ENST00000551848 N/A 1.116±0.00 N/A N/A N/A N/A N/A N/A 0.081±0.00 0.843±0.00 N/A 2.258±0.00 1.012±0.00 1.067±0.00
ENST00000552160 N/A N/A N/A N/A 1.565±0.00 1.024±0.00 N/A N/A 0.071±0.00 1.825±0.00 0.367±0.04 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017G CIL_00017G_0001 CGP 12:31959370-32383633
CIL_0003DJ CIL_0003DJ_0002 CGP 12:32106835-32646050

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005794 IDA:IEA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0005856 NAS cytoskeleton
GO:0005881 IDA cytoplasmic microtubule
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006810 IEA transport
GO:0008093 IDA cytoskeletal adaptor activity
GO:0008298 NAS intracellular mRNA localization
GO:0009653 TAS anatomical structure morphogenesis
GO:0016020 IDA membrane
GO:0016032 IMP viral process
GO:0017137 IPI Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0031871 ISS proteinase activated receptor binding
GO:0033365 IDA protein localization to organelle
GO:0034063 ISS stress granule assembly
GO:0034452 IDA dynactin binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045298 TAS tubulin complex
GO:0045502 IDA dynein binding
GO:0048260 IMP positive regulation of receptor-mediated endocytosis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0072385 IMP minus-end-directed organelle transport along microtubule
GO:0072393 ISS microtubule anchoring at microtubule organizing center
GO:0072517 IDA host cell viral assembly compartment
GO:1900275 ISS negative regulation of phospholipase C activity
GO:1900276 ISS regulation of proteinase activated receptor activity
GO:1900737 ISS negative regulation of phospholipase C-activating G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074357 BICD1 (1 of 2) bicaudal D homolog 1 (Drosophila) protein_coding Danio_rerio
ENSDARG00000079496 bicd1a bicaudal D homolog 1a protein_coding Danio_rerio
ENSMUSG00000003452 Bicd1 bicaudal D homolog 1 (Drosophila) protein_coding Mus_musculus

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