C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bicaudal D homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281474 BICD1-002 ENSG00000151746 9606 + 12:32107229-32377877 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLungOvaryPlacentaTestisENST00000281474
Transcript ID Adrenal Breast Heart Lung Ovary Placenta Testis
ENST00000281474 0.847±0.00 0.885±0.00 0.403±0.00 0.707±0.00 3.581±0.00 0.431±0.00 0.706±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017G CIL_00017G_0001 CGP 12:31959370-32383633
CIL_0003DJ CIL_0003DJ_0002 CGP 12:32106835-32646050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005794 IDA:IEA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0005856 NAS cytoskeleton
GO:0005881 IDA cytoplasmic microtubule
GO:0006396 TAS RNA processing
GO:0006810 IEA transport
GO:0008093 IDA cytoskeletal adaptor activity
GO:0008298 NAS intracellular mRNA localization
GO:0009653 TAS anatomical structure morphogenesis
GO:0016020 IDA membrane
GO:0016032 IMP viral process
GO:0017137 IPI Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0031871 ISS proteinase activated receptor binding
GO:0033365 IDA protein localization to organelle
GO:0034063 ISS stress granule assembly
GO:0034452 IDA dynactin binding
GO:0045298 TAS tubulin complex
GO:0045502 IDA dynein binding
GO:0048260 IMP positive regulation of receptor-mediated endocytosis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0072385 IMP minus-end-directed organelle transport along microtubule
GO:0072393 ISS microtubule anchoring at microtubule organizing center
GO:0072517 IDA host cell viral assembly compartment
GO:1900275 ISS negative regulation of phospholipase C activity
GO:1900276 ISS regulation of proteinase activated receptor activity
GO:1900737 ISS negative regulation of phospholipase C-activating G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003544 Bicd1-002 protein_coding Mus_musculus 0 3829
ENSMUST00000111513 Bicd1-003 protein_coding Mus_musculus 0 3142
ENSMUST00000086829 Bicd1-001 protein_coding Mus_musculus 0 3142
ENSMUST00000173408 Bicd1-007 nonsense_mediated_decay Mus_musculus 0 3136
ENSMUST00000174886 Bicd1-006 retained_intron Mus_musculus 0 793
ENSMUST00000130270 Bicd1-004 retained_intron Mus_musculus 0 725
ENSMUST00000172926 Bicd1-008 protein_coding Mus_musculus 0 544
ENSMUST00000140759 Bicd1-005 retained_intron Mus_musculus 0 339

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