C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GDNF family receptor alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151892 GFRA1 9606 - 10:116056925-116273467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355422 GFRA1-002 116063764-116273467 protein_coding
  ENST00000369234 GFRA1-003 116064401-116273033 protein_coding
  ENST00000369236 GFRA1-001 116056925-116272282 protein_coding
  ENST00000439649 GFRA1-201 116056933-116273284 protein_coding
  ENST00000490345 GFRA1-004 116272004-116272643 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369234ENST00000369236ENST00000439649
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369234 N/A N/A N/A N/A N/A N/A N/A 10.004±0.00 N/A N/A N/A 0.054±0.00 N/A
ENST00000369236 4.466±0.00 6.517±0.00 1.952±0.95 4.946±1.22 5.715±3.81 0.952±0.10 3.834±1.58 4.712±1.16 2.525±0.00 1.076±0.52 1.714±1.06 0.029±0.01 0.862±0.49
ENST00000439649 0.830±0.00 N/A 0.563±0.32 N/A 1.856±0.00 0.265±0.00 N/A 0.778±0.00 N/A N/A 1.478±0.46 N/A 0.487±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S7 CIL_0006S7_0001 CGP 10:115093365-116273467
CIL_00088K CIL_00088K_0001 VISTA 10:115892604-116494065
CIL_0008H3 CIL_0008H3_0001 VISTA 10:115937655-116538917
CIL_0006FD CIL_0006FD_0002 CGP 10:116056925-116380029

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005886 IEA plasma membrane
GO:0007166 NAS cell surface receptor signaling pathway
GO:0007399 IEA nervous system development
GO:0007411 TAS axon guidance
GO:0016167 TAS glial cell-derived neurotrophic factor receptor activity
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane
GO:0035860 TAS glial cell-derived neurotrophic factor receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013975 gfra1b gdnf family receptor alpha 1b protein_coding Danio_rerio
ENSDARG00000039936 GFRA1 (2 of 3) GDNF family receptor alpha 1 protein_coding Danio_rerio
ENSDARG00000058513 gfra1a gdnf family receptor alpha 1a protein_coding Danio_rerio
ENSMUSG00000025089 Gfra1 glial cell line derived neurotrophic factor family receptor alpha 1 protein_coding Mus_musculus

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