C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDNF family receptor alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369236 GFRA1-001 ENSG00000151892 9606 - 10:116056925-116272282 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369236
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369236 4.466±0.00 6.517±0.00 1.952±0.95 4.946±1.22 5.715±3.81 0.952±0.10 3.834±1.58 4.712±1.16 2.525±0.00 1.076±0.52 1.714±1.06 0.029±0.01 0.862±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S7 CIL_0006S7_0001 CGP 10:115093365-116273467
CIL_00088K CIL_00088K_0001 VISTA 10:115892604-116494065
CIL_0008H3 CIL_0008H3_0001 VISTA 10:115937655-116538917
CIL_0006FD CIL_0006FD_0002 CGP 10:116056925-116380029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005886 IEA plasma membrane
GO:0007166 NAS cell surface receptor signaling pathway
GO:0007411 TAS axon guidance
GO:0016167 TAS glial cell-derived neurotrophic factor receptor activity
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane
GO:0035860 TAS glial cell-derived neurotrophic factor receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129100 Gfra1-004 protein_coding Mus_musculus 0 1960
ENSMUST00000026076 Gfra1-001 protein_coding Mus_musculus 0 1906
ENSMUST00000152507 Gfra1-002 protein_coding Mus_musculus 0 1855
ENSMUST00000169850 Gfra1-201 protein_coding Mus_musculus 0 1799
ENSMUST00000140141 Gfra1-003 nonsense_mediated_decay Mus_musculus 0 1648
ENSMUST00000138530 Gfra1-007 protein_coding Mus_musculus 0 401
ENSMUST00000131877 Gfra1-005 protein_coding Mus_musculus 0 381
ENSMUST00000022699 Gfra2-201 protein_coding Mus_musculus 3e-27 130

Loading