C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008H3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm916 VISTA 9606 10:115937655-116538917
GeneTranscriptPositionBiotype
ENSG00000107518 (ATRNL1)
attractin-like 1 		ENST00000355044 (ATRNL1-001) 115093625-115948992 protein_coding
ENST00000424738 (ATRNL1-004) 115467174-115597982 processed_transcript
ENST00000449616 (ATRNL1-007) 115909351-115944959 processed_transcript
ENST00000524503 (ATRNL1-008) 115171253-115220460 processed_transcript
ENST00000526373 (ATRNL1-010) 115300231-115462016 protein_coding
ENST00000526946 (ATRNL1-009) 115093371-115160169 protein_coding
ENST00000527407 (ATRNL1-005) 115093463-115171327 protein_coding
ENST00000534530 (ATRNL1-011) 115301973-115549527 processed_transcript
ENST00000609571 (ATRNL1-002) 115093365-115171376 protein_coding
ENST00000616894 (ATRNL1-003) 115093365-115171369 nonsense_mediated_decay
ENSG00000182645 (CCDC172)
coiled-coil domain containing 172 		ENST00000333254 (CCDC172-002) 116324428-116380029 protein_coding
ENST00000463594 (CCDC172-004) 116340736-116342233 processed_transcript
ENST00000497093 (CCDC172-003) 116325008-116342279 processed_transcript
ENSG00000203837 (PNLIPRP3)
pancreatic lipase-related protein 3 		ENST00000369230 (PNLIPRP3-001) 116427867-116477957 protein_coding
ENSG00000227096 (HMGB3P8)
high mobility group box 3 pseudogene 8 		ENST00000449709 (HMGB3P8-001) 116439468-116440044 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008H3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm916 VISTA 10090 19:58119231-58720471
GeneTranscriptPositionBiotype
ENSMUSG00000025089 (Gfra1)
glial cell line derived neurotrophic factor family receptor alpha 1 		ENSMUST00000026076 (Gfra1-001) 58235604-58455398 protein_coding
ENSMUST00000123957 (Gfra1-008) 58453421-58454620 protein_coding
ENSMUST00000129100 (Gfra1-004) 58235612-58454592 protein_coding
ENSMUST00000131877 (Gfra1-005) 58453352-58455909 protein_coding
ENSMUST00000135730 (Gfra1-006) 58454324-58455161 protein_coding
ENSMUST00000138530 (Gfra1-007) 58453335-58455006 protein_coding
ENSMUST00000140141 (Gfra1-003) 58238162-58455359 nonsense_mediated_decay
ENSMUST00000152507 (Gfra1-002) 58238162-58455301 protein_coding
ENSMUST00000169850 (Gfra1-201) 58236692-58454466 protein_coding
ENSMUSG00000025090 (Ccdc172)
coiled-coil domain containing 172 		ENSMUST00000069419 (Ccdc172-201) 58512002-58553085 protein_coding
ENSMUSG00000046008 (Pnlip)
pancreatic lipase 		ENSMUST00000057270 (Pnlip-201) 58670365-58681786 protein_coding
ENSMUSG00000054843 (Atrnl1)
attractin like 1 		ENSMUST00000077282 (Atrnl1-201) 57611034-58133338 protein_coding
ENSMUSG00000100001 (RP23-16C24.1)
RIKEN cDNA 1810007D17 gene 		ENSMUST00000187629 (RP23-16C24.1-001) 58606329-58629753 lincRNA
ENSMUSG00000101088 (RP23-135H14.1)
RIKEN cDNA 1810018F18 gene 		ENSMUST00000188253 (RP23-135H14.1-003) 58698917-58699330 processed_transcript
ENSMUST00000189546 (RP23-135H14.1-002) 58698917-58701323 processed_transcript
ENSMUST00000189764 (RP23-135H14.1-001) 58699082-58715770 transcribed_unprocessed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008H3_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000449616ENST00000524503ENST00000526373ENST00000526946ENST00000527407ENST00000534530ENST00000609571ENST00000616894ENSG00000182645ENST00000333254ENST00000463594ENST00000497093ENSG00000203837ENST00000369230ENSG00000227096ENST00000449709CIL_0008H3_0002ENSMUSG00000025089ENSMUST00000026076ENSMUST00000123957ENSMUST00000129100ENSMUST00000131877ENSMUST00000135730ENSMUST00000138530ENSMUST00000140141ENSMUST00000152507ENSMUST00000169850ENSMUSG00000025090ENSMUST00000069419ENSMUSG00000046008ENSMUST00000057270ENSMUSG00000054843ENSMUST00000077282ENSMUSG00000100001ENSMUST00000187629ENSMUSG00000101088ENSMUST00000188253ENSMUST00000189546ENSMUST00000189764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008H3_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000526946ENST00000527407ENST00000609571ENST00000616894ENSG00000182645ENST00000333254ENST00000497093ENSG00000203837ENST00000369230ENSG00000227096ENST00000449709CIL_0008H3_0002ENSMUSG00000025089ENSMUST00000026076ENSMUST00000123957ENSMUST00000129100ENSMUST00000131877ENSMUST00000140141ENSMUST00000152507ENSMUST00000169850ENSMUSG00000025090ENSMUST00000069419ENSMUSG00000046008ENSMUST00000057270ENSMUSG00000054843ENSMUST00000077282ENSMUSG00000100001ENSMUST00000187629ENSMUSG00000101088ENSMUST00000188253ENSMUST00000189546ENSMUST00000189764
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107518 ENST00000355044 N/A N/A 0.794±0.00 15.694±4.95 0.167±0.00 0.787±0.09 0.120±0.00 0.594±0.00 0.196±0.06 0.043±0.03 N/A 1.353±0.97 0.163±0.04 0.649±0.05
ENST00000424738 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.083±0.00 N/A N/A N/A
ENST00000449616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.181±0.96 6.966±6.92 N/A N/A
ENST00000527407 N/A N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A
ENST00000534530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609571 N/A N/A N/A 77.701±0.00 0.802±0.65 4.947±0.00 0.312±0.00 1.131±0.00 N/A N/A N/A 3.226±0.00 0.840±0.61 4.495±0.41
ENST00000616894 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A N/A
ENSG00000182645 ENST00000333254 0.024±0.00 0.012±0.00 N/A 0.011±0.00 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.970±0.07
ENST00000463594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.234±0.00
ENSG00000203837 ENST00000369230 0.457±0.00 N/A N/A 0.004±0.00 N/A 0.410±0.00 N/A N/A N/A N/A 0.030±0.00 0.106±0.10 N/A 0.018±0.01
ENSG00000227096 ENST00000449709 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025089 ENSMUST00000026076 N/A N/A 0.481±0.07 5.284±3.24 0.114±0.00 0.198±0.00 0.232±0.09 0.359±0.04 0.994±0.43 0.583±0.21 0.151±0.03 0.305±0.00 0.028±0.00 0.276±0.00
ENSMUST00000123957 N/A 0.585±0.10 N/A N/A 1.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129100 0.219±0.12 0.155±0.08 0.937±0.12 4.660±0.00 0.486±0.26 0.322±0.05 0.561±0.23 1.224±0.47 3.285±2.18 1.203±0.00 0.540±0.20 0.373±0.31 0.028±0.01 0.699±0.32
ENSMUST00000131877 N/A N/A N/A N/A N/A 0.778±0.08 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140141 N/A N/A N/A N/A N/A 0.416±0.00 N/A N/A N/A N/A N/A 0.491±0.07 N/A N/A
ENSMUST00000152507 N/A 0.292±0.17 N/A N/A 0.242±0.04 0.550±0.16 N/A 1.115±0.00 N/A 0.623±0.00 N/A 1.868±0.00 0.066±0.00 N/A
ENSMUST00000169850 0.346±0.12 0.152±0.10 0.279±0.00 3.708±2.73 0.549±0.18 0.532±0.16 0.743±0.27 0.931±0.44 3.992±3.10 1.755±0.40 0.114±0.00 1.157±0.67 0.038±0.02 0.187±0.00
ENSMUSG00000025090 ENSMUST00000069419 N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A N/A 0.302±0.12 0.458±0.57 12.036±14.67
ENSMUSG00000046008 ENSMUST00000057270 0.149±0.04 0.075±0.02 0.165±0.13 1.376±1.30 0.167±0.08 399.871±399.46 0.032±0.02 N/A 0.087±0.08 1.616±1.54 0.054±0.02 0.408±0.25 0.023±0.01 0.373±0.12
ENSMUSG00000054843 ENSMUST00000077282 11.323±4.24 7.016±0.47 4.321±0.50 8.247±1.03 7.876±1.72 23.109±1.16 3.598±0.37 9.105±0.80 2.651±1.35 14.489±0.66 1.416±0.16 12.882±3.01 4.113±1.89 1.463±0.88
ENSMUSG00000100001 ENSMUST00000187629 N/A N/A N/A N/A N/A 0.224±0.07 N/A N/A N/A N/A N/A N/A N/A 0.091±0.02
ENSMUSG00000101088 ENSMUST00000188253 N/A N/A N/A N/A N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189546 N/A N/A N/A N/A N/A 0.269±0.12 N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.027±0.00
ENSMUST00000189764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.01 N/A

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