C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein D-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152795 HNRNPDL 9606 - 4:82422564-82430225 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295470 HNRNPDL-001 82422564-82429866 protein_coding
  ENST00000349655 HNRNPDL-005 82424629-82429447 nonsense_mediated_decay
  ENST00000502762 HNRNPDL-002 82424629-82430225 nonsense_mediated_decay
  ENST00000507721 HNRNPDL-004 82424625-82429397 protein_coding
  ENST00000514511 HNRNPDL-003 82425583-82429425 nonsense_mediated_decay
  ENST00000602300 HNRNPDL-006 82424629-82429441 protein_coding
  ENST00000614627 HNRNPDL-201 82422565-82430225 protein_coding
  ENST00000621267 HNRNPDL-202 82422565-82430225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295470ENST00000349655ENST00000507721ENST00000514511ENST00000602300ENST00000621267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295470 N/A N/A 2.289±0.00 6.036±1.10 N/A N/A 1.689±0.00 7.660±0.00 7.748±0.00 4.205±0.00 0.884±0.00 17.293±3.37 10.603±7.82 N/A
ENST00000349655 N/A N/A N/A N/A 5.345±0.00 5.935±0.00 2.861±0.00 N/A N/A 16.472±0.00 11.256±7.67 19.930±0.00 10.055±0.00 N/A
ENST00000507721 6.126±0.00 13.787±0.00 1.930±0.00 8.793±1.99 6.553±1.76 4.021±0.84 7.785±0.00 17.711±0.00 7.079±0.00 13.440±5.20 1.450±0.00 24.370±0.00 5.381±1.08 N/A
ENST00000514511 N/A N/A 7.150±0.00 10.429±0.00 5.401±0.00 7.866±0.00 N/A 6.442±0.00 N/A N/A N/A N/A N/A N/A
ENST00000602300 60.322±0.00 156.162±0.00 11.304±0.00 67.561±28.49 28.634±15.10 18.147±5.49 29.640±18.70 20.748±13.92 27.528±2.80 45.229±13.87 22.080±15.26 87.249±30.77 54.454±23.49 152.128±9.00
ENST00000621267 6.007±0.00 14.745±0.00 N/A 10.026±0.00 5.018±0.00 N/A N/A N/A 2.610±0.00 6.193±0.00 N/A 22.575±0.00 4.179±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225
CIL_0007JO CIL_0007JO_0001 UCNEbase 4:82354680-82425790
CIL_00052Q CIL_00052Q_0002 CGP 4:82422564-82461091

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008143 IDA poly(A) binding
GO:0010468 IDA regulation of gene expression
GO:0034046 IDA poly(G) binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003429 hnrpdl heterogeneous nuclear ribonucleoprotein D-like protein_coding Danio_rerio
ENSMUSG00000029328 Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like protein_coding Mus_musculus

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