C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349655 HNRNPDL-005 ENSG00000152795 9606 - 4:82424629-82429447 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungMuscleOvaryPlacentaENST00000349655
Transcript ID Breast Colon Heart Lung Muscle Ovary Placenta
ENST00000349655 5.345±0.00 5.935±0.00 2.861±0.00 16.472±0.00 11.256±7.67 19.930±0.00 10.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225
CIL_0007JO CIL_0007JO_0001 UCNEbase 4:82354680-82425790
CIL_00052Q CIL_00052Q_0002 CGP 4:82422564-82461091

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008143 IDA poly(A) binding
GO:0010468 IDA regulation of gene expression
GO:0034046 IDA poly(G) binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086900 Hnrnpdl-003 nonsense_mediated_decay Mus_musculus 0 2010
ENSMUST00000128187 Hnrnpdl-001 protein_coding Mus_musculus 0 1511
ENSMUST00000153442 Hnrnpdl-004 protein_coding Mus_musculus 0 1430
ENSMUST00000149384 Hnrnpdl-002 nonsense_mediated_decay Mus_musculus 0 1411
ENSMUST00000117277 Gm11488-001 processed_pseudogene Mus_musculus 0 1160
ENSMUST00000135424 Hnrnpdl-007 processed_transcript Mus_musculus 0 507
ENSMUST00000141337 Hnrnpdl-006 retained_intron Mus_musculus 0 477
ENSMUST00000151323 Hnrnpdl-005 retained_intron Mus_musculus 0 473

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