C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein D-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029328 Hnrnpdl 10090 - 5:100033577-100039664 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086900 Hnrnpdl-003 100034727-100039664 nonsense_mediated_decay
  ENSMUST00000128187 Hnrnpdl-001 100033577-100039222 protein_coding
  ENSMUST00000135424 Hnrnpdl-007 100033577-100036068 processed_transcript
  ENSMUST00000141337 Hnrnpdl-006 100034828-100036725 retained_intron
  ENSMUST00000149384 Hnrnpdl-002 100035426-100038895 nonsense_mediated_decay
  ENSMUST00000151323 Hnrnpdl-005 100035960-100037123 retained_intron
  ENSMUST00000153442 Hnrnpdl-004 100034721-100038869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086900ENSMUST00000128187ENSMUST00000135424ENSMUST00000141337ENSMUST00000149384ENSMUST00000153442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086900 9.943±5.56 9.621±1.18 N/A 32.859±9.09 7.919±1.49 9.351±4.71 N/A 3.110±0.60 17.665±8.56 6.271±0.54 8.512±0.63 14.789±3.47 61.564±72.03 12.163±15.65
ENSMUST00000128187 2.581±0.00 N/A 24.077±2.94 36.091±11.80 5.541±0.06 N/A 10.410±0.79 3.884±0.94 23.371±12.59 6.987±1.61 13.304±1.29 15.358±5.10 22.560±7.51 5.330±1.74
ENSMUST00000135424 N/A N/A N/A N/A 3.914±0.00 N/A N/A N/A 5.712±0.00 N/A N/A 10.727±0.00 N/A N/A
ENSMUST00000141337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.870±0.00 N/A N/A
ENSMUST00000149384 11.171±4.39 N/A 26.430±5.83 92.375±0.00 18.267±3.92 29.458±5.60 11.172±2.12 8.613±0.70 10.141±2.50 17.342±3.02 9.370±0.00 29.090±14.23 56.155±60.84 16.530±21.90
ENSMUST00000153442 7.205±4.07 N/A 45.175±10.96 40.254±17.30 8.573±1.40 N/A 9.107±1.03 5.582±2.19 24.144±18.59 18.321±3.70 16.113±1.47 32.532±7.20 29.130±7.00 4.551±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JO CIL_0007JO_0002 UCNEbase 5:99961884-100035864
CIL_00052Q CIL_00052Q_0003 CGP 5:100033577-100068762

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 ISA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 ISA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008143 IEA poly(A) binding
GO:0010468 IEA regulation of gene expression
GO:0016071 ISA mRNA metabolic process
GO:0034046 IEA poly(G) binding
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003429 hnrpdl heterogeneous nuclear ribonucleoprotein D-like protein_coding Danio_rerio
ENSG00000152795 HNRNPDL heterogeneous nuclear ribonucleoprotein D-like protein_coding Homo_sapiens

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