C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514511 HNRNPDL-003 ENSG00000152795 9606 - 4:82425583-82429425 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyENST00000514511
Transcript ID Bladder Brain Breast Colon Kidney
ENST00000514511 7.150±0.00 10.429±0.00 5.401±0.00 7.866±0.00 6.442±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225
CIL_0007JO CIL_0007JO_0001 UCNEbase 4:82354680-82425790
CIL_00052Q CIL_00052Q_0002 CGP 4:82422564-82461091

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153442 Hnrnpdl-004 protein_coding Mus_musculus 0 1258
ENSMUST00000128187 Hnrnpdl-001 protein_coding Mus_musculus 0 701
ENSMUST00000149384 Hnrnpdl-002 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000086900 Hnrnpdl-003 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000117277 Gm11488-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000135424 Hnrnpdl-007 processed_transcript Mus_musculus 0 555
ENSMUST00000151323 Hnrnpdl-005 retained_intron Mus_musculus 0 473
ENSMUST00000141337 Hnrnpdl-006 retained_intron Mus_musculus 0 300

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