C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 49, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153310 FAM49B 9606 - 8:129839593-130017129 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000401979 FAM49B-005 129841470-130016451 protein_coding
  ENST00000517654 FAM49B-009 129841484-130016451 protein_coding
  ENST00000517672 FAM49B-026 129871381-129970972 protein_coding
  ENST00000517801 FAM49B-027 129850554-129862326 retained_intron
  ENST00000518167 FAM49B-015 129871375-130016463 protein_coding
  ENST00000518283 FAM49B-016 129862234-130016637 protein_coding
  ENST00000518285 FAM49B-014 129970676-130016556 processed_transcript
  ENST00000518344 FAM49B-021 129902961-129939771 retained_intron
  ENST00000518879 FAM49B-012 129855611-130016665 processed_transcript
  ENST00000519020 FAM49B-024 129862326-130016558 protein_coding
  ENST00000519070 FAM49B-022 129871427-129939806 protein_coding
  ENST00000519110 FAM49B-008 129841470-130016672 protein_coding
  ENST00000519142 FAM49B-018 129855583-129970990 protein_coding
  ENST00000519540 FAM49B-004 129841497-129939872 protein_coding
  ENST00000519824 FAM49B-001 129839593-129939832 protein_coding
  ENST00000520204 FAM49B-025 129862229-129939763 protein_coding
  ENST00000520254 FAM49B-023 129862294-129939818 protein_coding
  ENST00000520887 FAM49B-028 129842080-129847317 retained_intron
  ENST00000521223 FAM49B-020 129855698-130016453 processed_transcript
  ENST00000522250 FAM49B-010 129841484-129939694 protein_coding
  ENST00000522361 FAM49B-017 129871433-130016451 protein_coding
  ENST00000522702 FAM49B-019 129855688-130016637 processed_transcript
  ENST00000522746 FAM49B-002 129841470-129939754 protein_coding
  ENST00000522941 FAM49B-003 129841503-129939746 protein_coding
  ENST00000523288 FAM49B-007 129841470-130016697 retained_intron
  ENST00000523509 FAM49B-006 129841470-130016405 protein_coding
  ENST00000523514 FAM49B-013 129970509-130016652 retained_intron
  ENST00000523993 FAM49B-011 129862250-130017129 protein_coding
  ENST00000615041 FAM49B-201 129846825-129871436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401979ENST00000517654ENST00000517801ENST00000519020ENST00000519110ENST00000519540ENST00000519824ENST00000522250ENST00000522941ENST00000523288ENST00000523509ENST00000615041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401979 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.603±0.00 N/A N/A N/A N/A
ENST00000517654 5.553±0.00 3.957±0.00 N/A N/A 5.709±0.00 1.971±0.00 2.538±0.00 3.280±0.00 2.369±0.00 7.964±0.00 N/A 8.800±5.54 8.820±3.18 N/A
ENST00000517801 N/A N/A N/A N/A N/A N/A 1.396±0.00 1.744±0.00 N/A N/A N/A 15.820±0.00 N/A N/A
ENST00000519020 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.265±0.00 N/A N/A N/A N/A
ENST00000519110 N/A N/A N/A N/A 2.563±0.00 N/A N/A N/A N/A N/A N/A 3.018±0.00 N/A N/A
ENST00000519540 2.411±0.00 N/A N/A N/A 3.957±1.67 2.243±0.00 2.449±0.00 0.777±0.00 1.241±0.00 N/A 1.504±0.00 9.158±6.93 7.017±0.84 9.491±3.44
ENST00000519824 N/A 1.772±0.00 N/A 13.114±8.12 2.487±0.00 0.604±0.00 1.669±0.00 N/A 0.763±0.37 N/A 1.116±0.00 4.068±2.89 2.082±0.00 1.980±0.48
ENST00000522250 2.094±0.00 9.095±0.00 N/A N/A 4.204±0.00 1.906±0.00 N/A 7.544±0.00 3.116±0.00 4.981±0.00 N/A 4.514±0.00 6.574±0.49 4.370±0.00
ENST00000522941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.348±0.00 4.805±0.00 6.460±0.00
ENST00000523288 N/A N/A 1.229±0.00 N/A N/A N/A N/A N/A N/A 2.098±0.71 N/A 2.415±0.00 N/A N/A
ENST00000523509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.015±0.00 N/A N/A N/A
ENST00000615041 N/A N/A 1.711±0.00 N/A N/A 5.080±0.00 N/A 1.986±0.00 3.793±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D6 CIL_0008D6_0001 VISTA 8:129331844-129935071
CIL_0007U4 CIL_0007U4_0001 VISTA 8:129332688-129934097
CIL_0004ZN CIL_0004ZN_0001 CGP 8:129748196-130017129
CIL_0004ZM CIL_0004ZM_0001 CGP 8:129839593-130443660

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005929 IEA cilium
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045417 fam49bb family with sequence similarity 49, member Bb protein_coding Danio_rerio
ENSMUSG00000022378 Fam49b family with sequence similarity 49, member B protein_coding Mus_musculus

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