C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: musashi RNA-binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153944 MSI2 9606 + 17:57255851-57684685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284073 MSI2-001 57256534-57684685 protein_coding
  ENST00000322684 MSI2-003 57257013-57632900 protein_coding
  ENST00000416426 MSI2-002 57255851-57680121 protein_coding
  ENST00000442934 MSI2-005 57285844-57680297 protein_coding
  ENST00000577241 MSI2-015 57596903-57616631 retained_intron
  ENST00000579180 MSI2-006 57294685-57632905 protein_coding
  ENST00000579205 MSI2-011 57406812-57627302 processed_transcript
  ENST00000579466 MSI2-017 57671474-57675056 processed_transcript
  ENST00000579483 MSI2-004 57262115-57268550 retained_intron
  ENST00000579505 MSI2-013 57440690-57675059 processed_transcript
  ENST00000579531 MSI2-019 57257042-57274433 processed_transcript
  ENST00000579590 MSI2-009 57257018-57432614 protein_coding
  ENST00000581523 MSI2-018 57256743-57274489 processed_transcript
  ENST00000581776 MSI2-008 57256740-57365021 nonsense_mediated_decay
  ENST00000582453 MSI2-014 57256774-57565995 processed_transcript
  ENST00000582772 MSI2-012 57444487-57596950 processed_transcript
  ENST00000583705 MSI2-007 57625572-57633183 retained_intron
  ENST00000583821 MSI2-016 57626915-57631949 retained_intron
  ENST00000584476 MSI2-010 57257124-57262433 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284073ENST00000416426ENST00000579483ENST00000583705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284073 2.528±0.00 2.937±0.00 2.082±0.00 8.735±2.99 4.144±0.83 3.363±0.72 6.854±4.14 11.392±0.00 1.789±0.00 3.055±0.84 5.510±4.88 8.293±2.03 10.753±6.97 9.769±2.48
ENST00000416426 N/A N/A 8.760±0.00 N/A N/A N/A N/A 2.151±0.00 N/A N/A N/A N/A N/A N/A
ENST00000579483 N/A N/A 4.502±0.00 N/A N/A 2.193±0.00 N/A N/A N/A 1.208±0.00 0.997±0.00 4.474±0.00 N/A N/A
ENST00000583705 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.610±0.00 0.514±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000880 CIL_000880_0001 VISTA 17:57137969-57739404
CIL_0008GV CIL_0008GV_0001 VISTA 17:57172762-57775247
CIL_0007R8 CIL_0007R8_0001 VISTA 17:57241317-57842812

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003727 IEA single-stranded RNA binding
GO:0005737 IEA cytoplasm
GO:0005844 IEA polysome
GO:0008266 IEA poly(U) RNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048864 IEA stem cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032614 msi2b musashi homolog 2b (Drosophila) protein_coding Danio_rerio
ENSDARG00000033901 msi2a musashi homolog 2a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000069769 Msi2 musashi RNA-binding protein 2 protein_coding Mus_musculus

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