C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: musashi RNA-binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069769 Msi2 10090 - 11:88339382-88718513 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092794 Msi2-006 88343889-88718101 protein_coding
  ENSMUST00000107908 Msi2-005 88685954-88718182 protein_coding
  ENSMUST00000107909 Msi2-001 88339382-88718229 protein_coding
  ENSMUST00000126293 Msi2-004 88712188-88718212 processed_transcript
  ENSMUST00000138790 Msi2-002 88477964-88718110 retained_intron
  ENSMUST00000144699 Msi2-003 88590055-88718513 protein_coding
  ENSMUST00000148013 Msi2-007 88365515-88590147 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092794ENSMUST00000107909ENSMUST00000144699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092794 6.829±1.58 25.735±7.10 8.495±0.00 21.924±1.47 9.287±3.68 11.221±1.29 13.250±1.58 12.634±1.17 3.514±1.11 11.590±1.66 11.306±0.00 29.432±6.94 3.254±1.23 27.828±12.33
ENSMUST00000107909 5.542±2.15 9.466±5.17 16.579±1.31 20.375±9.94 4.806±1.53 10.528±2.81 4.240±0.00 9.164±2.16 2.559±1.18 13.191±2.08 8.973±3.81 19.936±6.89 1.707±0.52 3.233±2.04
ENSMUST00000144699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.535±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_0007PL CIL_0007PL_0002 UCNEbase 11:88049942-88585488
CIL_0007R8 CIL_0007R8_0002 VISTA 11:88167358-88768721
CIL_0008GV CIL_0008GV_0002 VISTA 11:88227850-88829479
CIL_000880 CIL_000880_0002 VISTA 11:88254791-88855816
CIL_00039S CIL_00039S_0002 CGP 11:88339382-88864586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 IDA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008266 IDA poly(U) RNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048864 IMP stem cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032614 msi2b musashi homolog 2b (Drosophila) protein_coding Danio_rerio
ENSDARG00000033901 msi2a musashi homolog 2a (Drosophila) protein_coding Danio_rerio
ENSG00000153944 MSI2 musashi RNA-binding protein 2 protein_coding Homo_sapiens

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