C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000284073 MSI2-001 ENSG00000153944 9606 + 17:57256534-57684685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284073 2.528±0.00 2.937±0.00 2.082±0.00 8.735±2.99 4.144±0.83 3.363±0.72 6.854±4.14 11.392±0.00 1.789±0.00 3.055±0.84 5.510±4.88 8.293±2.03 10.753±6.97 9.769±2.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000880 CIL_000880_0001 VISTA 17:57137969-57739404
CIL_0008GV CIL_0008GV_0001 VISTA 17:57172762-57775247
CIL_0007R8 CIL_0007R8_0001 VISTA 17:57241317-57842812

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003727 IEA single-stranded RNA binding
GO:0005737 IEA cytoplasm
GO:0005844 IEA polysome
GO:0008266 IEA poly(U) RNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048864 IEA stem cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107909 Msi2-001 protein_coding Mus_musculus 0 4440
ENSMUST00000092794 Msi2-006 protein_coding Mus_musculus 0 1242
ENSDART00000050649 msi2b-005 protein_coding Danio_rerio 0 815
ENSMUST00000138790 Msi2-002 retained_intron Mus_musculus 0 767
ENSDART00000100194 msi2b-001 protein_coding Danio_rerio 0 732
ENSMUST00000126293 Msi2-004 processed_transcript Mus_musculus 0 704
ENSMUST00000148013 Msi2-007 retained_intron Mus_musculus 0 686
ENSMUST00000107908 Msi2-005 protein_coding Mus_musculus 0 665
ENSDART00000099473 msi2a-201 protein_coding Danio_rerio 0 638
ENSDART00000132096 msi2a-001 protein_coding Danio_rerio 0 638
ENSDART00000152414 msi2b-011 protein_coding Danio_rerio 0 628
ENSDART00000145918 msi2b-015 protein_coding Danio_rerio 0 606
ENSMUST00000144699 Msi2-003 protein_coding Mus_musculus 0 577
ENSDART00000156160 msi2b-008 protein_coding Danio_rerio 0 573
ENSDART00000154311 msi2b-002 retained_intron Danio_rerio 0 492
ENSDART00000152330 msi2b-009 protein_coding Danio_rerio 0 392
ENSDART00000152790 msi2b-010 protein_coding Danio_rerio 0 374
ENSDART00000154714 msi2b-004 protein_coding Danio_rerio 0 372
ENSDART00000141183 msi2a-003 retained_intron Danio_rerio 0 363
ENSDART00000135642 msi2a-002 retained_intron Danio_rerio 0 361
ENSDART00000156914 msi2b-003 protein_coding Danio_rerio 0 340
ENSDART00000041634 msi1-201 protein_coding Danio_rerio 0 339
ENSDART00000097427 msi1-001 protein_coding Danio_rerio 0 339
ENSDART00000134104 msi2a-004 retained_intron Danio_rerio 0 335
ENSDART00000134822 msi1-004 protein_coding Danio_rerio 0 283
ENSDART00000138380 msi1-002 retained_intron Danio_rerio 0 265

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