C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008GV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm440 VISTA 9606 17:57172762-57775247
GeneTranscriptPositionBiotype
ENSG00000153944 (MSI2)
musashi RNA-binding protein 2 		ENST00000284073 (MSI2-001) 57256534-57684685 protein_coding
ENST00000322684 (MSI2-003) 57257013-57632900 protein_coding
ENST00000416426 (MSI2-002) 57255851-57680121 protein_coding
ENST00000442934 (MSI2-005) 57285844-57680297 protein_coding
ENST00000577241 (MSI2-015) 57596903-57616631 retained_intron
ENST00000579180 (MSI2-006) 57294685-57632905 protein_coding
ENST00000579205 (MSI2-011) 57406812-57627302 processed_transcript
ENST00000579466 (MSI2-017) 57671474-57675056 processed_transcript
ENST00000579483 (MSI2-004) 57262115-57268550 retained_intron
ENST00000579505 (MSI2-013) 57440690-57675059 processed_transcript
ENST00000579531 (MSI2-019) 57257042-57274433 processed_transcript
ENST00000579590 (MSI2-009) 57257018-57432614 protein_coding
ENST00000581523 (MSI2-018) 57256743-57274489 processed_transcript
ENST00000581776 (MSI2-008) 57256740-57365021 nonsense_mediated_decay
ENST00000582453 (MSI2-014) 57256774-57565995 processed_transcript
ENST00000582772 (MSI2-012) 57444487-57596950 processed_transcript
ENST00000583705 (MSI2-007) 57625572-57633183 retained_intron
ENST00000583821 (MSI2-016) 57626915-57631949 retained_intron
ENST00000584476 (MSI2-010) 57257124-57262433 retained_intron
ENSG00000166329 (CCDC182)
coiled-coil domain containing 182 		ENST00000299415 (CCDC182-001) 57744481-57745312 protein_coding
ENSG00000242889 (RN7SL449P)
RNA, 7SL, cytoplasmic 449, pseudogene 		ENST00000464937 (RN7SL449P-201) 57618108-57618393 misc_RNA
ENSG00000263499 (RP11-118E18.4)
 ENST00000578662 (RP11-118E18.4-001) 57600856-57608412 antisense
ENSG00000265542 (RP11-60A24.3)
 ENST00000580960 (RP11-60A24.3-002) 57771946-57834749 lincRNA
ENST00000581805 (RP11-60A24.3-001) 57771946-57834609 lincRNA
ENSG00000266100 (RP11-118E18.2)
 ENST00000577189 (RP11-118E18.2-001) 57522248-57523597 antisense
ENSG00000279281 (RP11-226M10.3)
 ENST00000623054 (RP11-226M10.3-001) 57448218-57450291 TEC
ENSG00000279555 (RP11-426D19.1)
 ENST00000623762 (RP11-426D19.1-001) 57277920-57280017 TEC
ENSG00000280028 (RP11-118E18.1)
 ENST00000623221 (RP11-118E18.1-001) 57531769-57532355 TEC
CIL_0008GV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm440 VISTA 10090 11:88227850-88829479
GeneTranscriptPositionBiotype
ENSMUSG00000034031 (1700106J16Rik)
RIKEN cDNA 1700106J16 gene 		ENSMUST00000037268 (1700106J16Rik-001) 88294058-88295261 protein_coding
ENSMUSG00000069769 (Msi2)
musashi RNA-binding protein 2 		ENSMUST00000092794 (Msi2-006) 88343889-88718101 protein_coding
ENSMUST00000107908 (Msi2-005) 88685954-88718182 protein_coding
ENSMUST00000107909 (Msi2-001) 88339382-88718229 protein_coding
ENSMUST00000126293 (Msi2-004) 88712188-88718212 processed_transcript
ENSMUST00000138790 (Msi2-002) 88477964-88718110 retained_intron
ENSMUST00000144699 (Msi2-003) 88590055-88718513 protein_coding
ENSMUST00000148013 (Msi2-007) 88365515-88590147 retained_intron
ENSMUSG00000081304 (Gm11509)
predicted gene 11509 		ENSMUST00000117358 (Gm11509-001) 88335660-88335984 processed_pseudogene
ENSMUSG00000084411 (Gm11510)
predicted gene 11510 		ENSMUST00000120278 (Gm11510-001) 88432986-88433514 processed_pseudogene
ENSMUSG00000085246 (Gm15893)
predicted gene 15893 		ENSMUST00000143208 (Gm15893-001) 88356291-88363947 antisense
ENSMUSG00000085646 (Gm11493)
predicted gene 11493 		ENSMUST00000134567 (Gm11493-001) 88741011-88743369 lincRNA
ENSMUSG00000087574 (C030037D09Rik)
RIKEN cDNA C030037D09 gene 		ENSMUST00000125967 (C030037D09Rik-003) 88720489-88724173 lincRNA
ENSMUST00000136201 (C030037D09Rik-002) 88718804-88728893 lincRNA
ENSMUST00000138007 (C030037D09Rik-001) 88718645-88722600 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008GV_0001ENSG00000153944ENST00000284073ENST00000322684ENST00000416426ENST00000442934ENST00000577241ENST00000579180ENST00000579205ENST00000579466ENST00000579483ENST00000579505ENST00000579531ENST00000579590ENST00000581523ENST00000581776ENST00000582453ENST00000582772ENST00000583705ENST00000583821ENST00000584476ENSG00000166329ENST00000299415ENSG00000242889ENST00000464937ENSG00000263499ENST00000578662ENSG00000265542ENST00000580960ENST00000581805ENSG00000266100ENST00000577189ENSG00000279281ENST00000623054ENSG00000279555ENST00000623762ENSG00000280028ENST00000623221CIL_0008GV_0002ENSMUSG00000034031ENSMUST00000037268ENSMUSG00000069769ENSMUST00000092794ENSMUST00000107908ENSMUST00000107909ENSMUST00000126293ENSMUST00000138790ENSMUST00000144699ENSMUST00000148013ENSMUSG00000081304ENSMUST00000117358ENSMUSG00000084411ENSMUST00000120278ENSMUSG00000085246ENSMUST00000143208ENSMUSG00000085646ENSMUST00000134567ENSMUSG00000087574ENSMUST00000125967ENSMUST00000136201ENSMUST00000138007
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008GV_0001ENSG00000153944ENST00000284073ENST00000416426ENST00000579483ENST00000583705ENSG00000166329ENST00000299415ENSG00000242889ENST00000464937ENSG00000263499ENST00000578662ENSG00000265542ENST00000580960ENST00000581805ENSG00000266100ENST00000577189ENSG00000279281ENST00000623054ENSG00000279555ENST00000623762ENSG00000280028ENST00000623221CIL_0008GV_0002ENSMUSG00000034031ENSMUST00000037268ENSMUSG00000069769ENSMUST00000092794ENSMUST00000107909ENSMUST00000144699ENSMUSG00000081304ENSMUST00000117358ENSMUSG00000084411ENSMUST00000120278ENSMUSG00000085246ENSMUST00000143208ENSMUSG00000085646ENSMUST00000134567ENSMUSG00000087574ENSMUST00000125967ENSMUST00000136201ENSMUST00000138007
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153944 ENST00000284073 2.528±0.00 2.937±0.00 2.082±0.00 8.735±2.99 4.144±0.83 3.363±0.72 6.854±4.14 11.392±0.00 1.789±0.00 3.055±0.84 5.510±4.88 8.293±2.03 10.753±6.97 9.769±2.48
ENST00000322684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416426 N/A N/A 8.760±0.00 N/A N/A N/A N/A 2.151±0.00 N/A N/A N/A N/A N/A N/A
ENST00000442934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579483 N/A N/A 4.502±0.00 N/A N/A 2.193±0.00 N/A N/A N/A 1.208±0.00 0.997±0.00 4.474±0.00 N/A N/A
ENST00000579505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583705 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.610±0.00 0.514±0.00 N/A N/A N/A
ENST00000583821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166329 ENST00000299415 N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A 0.215±0.00 N/A 0.483±0.00 N/A 11.350±3.23
ENSG00000242889 ENST00000464937 N/A N/A 2.948±0.00 0.281±0.00 N/A 4.495±0.00 0.752±0.69 N/A 0.875±0.00 0.325±0.07 3.967±0.00 1.163±0.93 0.112±0.00 N/A
ENSG00000263499 ENST00000578662 N/A 0.080±0.00 0.501±0.00 0.015±0.00 0.029±0.00 0.414±0.00 0.105±0.08 0.041±0.00 0.207±0.00 0.814±0.00 N/A 0.047±0.01 N/A 0.073±0.00
ENSG00000265542 ENST00000580960 0.179±0.00 0.079±0.00 0.608±0.00 0.605±0.00 0.210±0.00 0.114±0.00 0.377±0.03 2.834±0.00 N/A N/A N/A 0.072±0.01 0.106±0.00 0.697±0.44
ENST00000581805 N/A N/A N/A 0.339±0.00 N/A N/A 0.824±0.00 0.472±0.00 0.030±0.00 N/A N/A N/A N/A 0.110±0.00
ENSG00000266100 ENST00000577189 N/A N/A N/A N/A 0.177±0.00 0.569±0.00 0.055±0.00 N/A N/A 0.534±0.00 N/A N/A N/A N/A
ENSG00000279281 ENST00000623054 0.067±0.00 0.213±0.00 0.661±0.00 0.148±0.01 0.573±0.38 0.456±0.37 0.238±0.08 0.161±0.14 0.283±0.23 0.233±0.22 0.655±0.00 0.501±0.38 0.203±0.18 0.355±0.25
ENSG00000279555 ENST00000623762 0.112±0.00 0.646±0.00 1.074±0.00 0.415±0.25 0.449±0.22 0.340±0.24 0.304±0.02 0.398±0.09 0.150±0.09 0.487±0.20 0.413±0.37 0.534±0.39 0.067±0.01 0.202±0.02
ENSG00000280028 ENST00000623221 N/A 0.039±0.00 2.414±0.00 0.541±0.40 2.556±0.00 0.284±0.10 0.115±0.00 N/A 1.559±0.00 0.781±0.00 N/A 0.703±0.87 0.069±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034031 ENSMUST00000037268 0.032±0.00 0.064±0.00 N/A 0.085±0.01 N/A N/A N/A 0.252±0.08 0.029±0.03 N/A 0.053±0.00 0.124±0.08 0.005±0.00 14.725±9.55
ENSMUSG00000069769 ENSMUST00000092794 6.829±1.58 25.735±7.10 8.495±0.00 21.924±1.47 9.287±3.68 11.221±1.29 13.250±1.58 12.634±1.17 3.514±1.11 11.590±1.66 11.306±0.00 29.432±6.94 3.254±1.23 27.828±12.33
ENSMUST00000107908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107909 5.542±2.15 9.466±5.17 16.579±1.31 20.375±9.94 4.806±1.53 10.528±2.81 4.240±0.00 9.164±2.16 2.559±1.18 13.191±2.08 8.973±3.81 19.936±6.89 1.707±0.52 3.233±2.04
ENSMUST00000126293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.535±0.00
ENSMUST00000148013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081304 ENSMUST00000117358 N/A N/A 0.050±0.00 0.200±0.01 0.379±0.09 N/A N/A 0.363±0.19 0.077±0.00 N/A N/A 0.342±0.00 0.060±0.00 0.266±0.08
ENSMUSG00000084411 ENSMUST00000120278 N/A N/A 0.209±0.16 0.189±0.02 N/A N/A N/A 0.242±0.00 N/A N/A 0.328±0.13 0.445±0.18 0.101±0.07 N/A
ENSMUSG00000085246 ENSMUST00000143208 0.169±0.11 0.525±0.19 0.189±0.08 0.589±0.31 0.198±0.11 0.226±0.10 0.304±0.07 0.214±0.03 0.080±0.05 0.352±0.06 0.092±0.06 0.577±0.42 0.058±0.03 0.249±0.09
ENSMUSG00000085646 ENSMUST00000134567 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.156±0.00 0.035±0.00 0.112±0.04
ENSMUSG00000087574 ENSMUST00000125967 N/A N/A N/A N/A N/A 2.969±0.00 N/A N/A N/A N/A N/A N/A 0.353±0.00 N/A
ENSMUST00000136201 N/A 1.099±0.15 1.090±0.06 0.934±0.38 0.662±0.09 0.889±0.00 1.569±0.40 1.110±0.16 0.491±0.06 0.680±0.03 0.931±0.40 0.722±0.02 0.304±0.17 22.063±0.91
ENSMUST00000138007 1.236±0.40 2.310±0.41 0.592±0.01 0.388±0.11 0.722±0.31 1.408±0.30 0.901±0.47 1.352±0.84 0.458±0.22 2.113±0.51 0.109±0.04 2.371±1.07 0.157±0.11 9.837±5.27

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