C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154582 TCEB1 9606 - 8:73939169-73972287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284811 TCEB1-007 73946401-73972106 protein_coding
  ENST00000518127 TCEB1-004 73945119-73972287 protein_coding
  ENST00000519082 TCEB1-009 73946700-73972252 protein_coding
  ENST00000519487 TCEB1-006 73946264-73970637 protein_coding
  ENST00000520210 TCEB1-003 73945608-73972170 protein_coding
  ENST00000520242 TCEB1-001 73945617-73972247 protein_coding
  ENST00000522337 TCEB1-010 73946473-73972232 protein_coding
  ENST00000523815 TCEB1-008 73946534-73971908 protein_coding
  ENST00000602840 TCEB1-005 73939169-73972186 protein_coding
  ENST00000622804 TCEB1-201 73945138-73971908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284811ENST00000518127ENST00000519082ENST00000519487ENST00000520242ENST00000522337ENST00000523815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284811 5.655±0.00 9.927±0.00 N/A 22.668±0.00 9.716±0.00 7.174±0.00 23.922±0.00 19.060±0.00 7.769±0.00 24.434±0.00 5.548±0.00 15.679±6.61 18.060±7.28 21.152±0.00
ENST00000518127 N/A 2.166±0.00 N/A N/A N/A 0.496±0.00 N/A N/A 0.332±0.00 N/A N/A 0.997±0.00 N/A N/A
ENST00000519082 7.375±0.00 N/A N/A N/A 6.891±5.56 9.211±0.00 5.739±4.20 1.711±0.00 2.499±0.00 16.429±0.00 3.594±2.02 22.028±17.15 17.895±0.00 39.140±19.74
ENST00000519487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.902±0.00 5.718±0.00 N/A N/A
ENST00000520242 2.470±0.00 4.396±0.00 1.093±0.00 7.517±0.57 2.283±0.55 2.447±0.48 2.608±0.57 3.249±2.72 1.946±0.27 3.608±0.03 1.786±0.12 7.169±6.69 9.810±6.72 18.633±13.38
ENST00000522337 N/A N/A N/A N/A N/A N/A N/A 0.620±0.00 N/A N/A N/A N/A N/A 18.758±0.00
ENST00000523815 10.763±0.00 15.744±0.00 0.863±0.00 15.242±0.00 12.994±0.00 6.069±5.26 N/A 1.296±0.00 9.323±0.00 N/A 6.367±0.00 42.872±16.62 20.778±8.01 27.356±8.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C4 CIL_0005C4_0002 CGP 8:73780097-73972287
CIL_00008W CIL_00008W_0002 CGP 8:73939169-73982783

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030891 IEA VCB complex
GO:0032403 IEA protein complex binding
GO:0032968 IEA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070449 IEA elongin complex
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045359 tceb1b transcription elongation factor B (SIII), polypeptide 1b protein_coding Danio_rerio
ENSMUSG00000079658 Tceb1 transcription elongation factor B (SIII), polypeptide 1 protein_coding Mus_musculus

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