C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520242 TCEB1-001 ENSG00000154582 9606 - 8:73945617-73972247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000520242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000520242 2.470±0.00 4.396±0.00 1.093±0.00 7.517±0.57 2.283±0.55 2.447±0.48 2.608±0.57 3.249±2.72 1.946±0.27 3.608±0.03 1.786±0.12 7.169±6.69 9.810±6.72 18.633±13.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C4 CIL_0005C4_0002 CGP 8:73780097-73972287
CIL_00008W CIL_00008W_0002 CGP 8:73939169-73982783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0050434 TAS positive regulation of viral transcription
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188641 Tceb1-002 protein_coding Mus_musculus 0 1029
ENSMUST00000115352 Tceb1-001 protein_coding Mus_musculus 0 911
ENSMUST00000186948 Tceb1-004 protein_coding Mus_musculus 0 680
ENSMUST00000185771 Tceb1-006 protein_coding Mus_musculus 0 671
ENSMUST00000187910 Tceb1-005 protein_coding Mus_musculus 0 638
ENSMUST00000185393 Tceb1-009 protein_coding Mus_musculus 0 429
ENSMUST00000119040 Gm14517-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000117761 Gm11386-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000186701 Tceb1-007 protein_coding Mus_musculus 0 250
ENSMUST00000134558 Gm16265-001 processed_pseudogene Mus_musculus 2e-32 145

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