C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor B (SIII), polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079658 Tceb1 10090 - 1:16641725-16657042 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115352 Tceb1-001 16642767-16657042 protein_coding
  ENSMUST00000185393 Tceb1-009 16643342-16648039 protein_coding
  ENSMUST00000185771 Tceb1-006 16643191-16656914 protein_coding
  ENSMUST00000186541 Tceb1-010 16646955-16656915 retained_intron
  ENSMUST00000186701 Tceb1-007 16643472-16656625 protein_coding
  ENSMUST00000186948 Tceb1-004 16643142-16657018 protein_coding
  ENSMUST00000187910 Tceb1-005 16643169-16657038 protein_coding
  ENSMUST00000188641 Tceb1-002 16641725-16656884 protein_coding
  ENSMUST00000188987 Tceb1-008 16646836-16656900 retained_intron
  ENSMUST00000190986 Tceb1-011 16647681-16656878 retained_intron
  ENSMUST00000191535 Tceb1-003 16647736-16657042 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115352ENSMUST00000185393ENSMUST00000185771ENSMUST00000186701ENSMUST00000186948ENSMUST00000187910ENSMUST00000188641ENSMUST00000188987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115352 N/A N/A 12.273±0.92 9.015±0.00 N/A 2.511±0.00 N/A 5.210±0.00 11.762±8.74 N/A 7.805±0.95 7.507±0.86 15.512±6.25 N/A
ENSMUST00000185393 N/A 2.749±0.00 45.031±0.00 105.819±0.00 N/A 5.597±0.00 N/A N/A N/A N/A 40.893±8.52 73.096±27.54 92.086±32.93 357.633±0.00
ENSMUST00000185771 N/A N/A N/A N/A N/A 1.245±0.00 N/A 6.110±0.00 N/A 2.696±0.00 12.901±0.00 3.283±1.39 N/A 31.459±4.12
ENSMUST00000186701 N/A 1.419±0.00 N/A N/A N/A 1.602±0.45 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186948 4.522±0.47 N/A 16.178±0.00 N/A 3.650±0.80 2.883±0.00 9.706±2.49 6.524±2.73 14.948±6.85 4.640±0.62 23.562±2.78 N/A 14.597±5.21 N/A
ENSMUST00000187910 3.135±0.00 N/A N/A N/A 2.867±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188641 2.548±0.86 2.898±0.83 16.562±2.75 17.863±7.95 2.436±1.17 2.547±0.83 3.495±1.27 4.649±1.30 5.335±2.57 4.430±0.40 19.629±3.68 3.809±2.45 4.091±2.40 10.234±1.76
ENSMUST00000188987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.309±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C4 CIL_0005C4_0003 CGP 1:16540790-16657042
CIL_00008W CIL_00008W_0003 CGP 1:16641725-16678275

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0030891 IEA VCB complex
GO:0032403 IEA protein complex binding
GO:0032968 IEA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0070449 IDA elongin complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045359 tceb1b transcription elongation factor B (SIII), polypeptide 1b protein_coding Danio_rerio
ENSG00000154582 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) protein_coding Homo_sapiens

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