C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 20, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155827 RNF20 9606 + 9:101533851-101563344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374819 RNF20-007 101533888-101540890 protein_coding
  ENST00000389120 RNF20-001 101533851-101563344 protein_coding
  ENST00000466817 RNF20-006 101533979-101540628 protein_coding
  ENST00000478072 RNF20-008 101560681-101561452 retained_intron
  ENST00000479306 RNF20-004 101533905-101540370 protein_coding
  ENST00000481046 RNF20-005 101533958-101540279 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374819ENST00000389120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374819 N/A N/A N/A N/A N/A 4.417±0.00 N/A 3.922±0.00 N/A N/A N/A 5.868±0.00 N/A N/A
ENST00000389120 10.234±0.00 6.176±0.00 2.840±0.00 7.889±4.08 6.909±5.43 8.217±5.58 5.388±4.50 5.830±5.38 4.799±1.53 3.857±0.09 9.235±8.59 9.893±5.42 7.850±3.03 24.685±3.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0001 CGP 9:101473171-101563344
CIL_00034Z CIL_00034Z_0001 CGP 9:101533851-101738580

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0002039 IDA p53 binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006355 IMP:IEA regulation of transcription, DNA-templated
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0010390 IDA histone monoubiquitination
GO:0016574 IEA histone ubiquitination
GO:0016874 IEA ligase activity
GO:0030336 IDA negative regulation of cell migration
GO:0031062 IEA positive regulation of histone methylation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0033503 IDA HULC complex
GO:0033523 IDA histone H2B ubiquitination
GO:0042393 IDA histone binding
GO:0045893 IMP positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016664 rnf20 ring finger protein 20, E3 ubiquitin protein ligase protein_coding Danio_rerio
ENSMUSG00000028309 Rnf20 ring finger protein 20 protein_coding Mus_musculus

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