C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 20, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389120 RNF20-001 ENSG00000155827 9606 + 9:101533851-101563344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389120 10.234±0.00 6.176±0.00 2.840±0.00 7.889±4.08 6.909±5.43 8.217±5.58 5.388±4.50 5.830±5.38 4.799±1.53 3.857±0.09 9.235±8.59 9.893±5.42 7.850±3.03 24.685±3.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0001 CGP 9:101473171-101563344
CIL_00034Z CIL_00034Z_0001 CGP 9:101533851-101738580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0002039 IDA p53 binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006355 IMP:IEA regulation of transcription, DNA-templated
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0010390 IDA histone monoubiquitination
GO:0016574 IEA histone ubiquitination
GO:0016874 IEA ligase activity
GO:0030336 IDA negative regulation of cell migration
GO:0031062 IEA positive regulation of histone methylation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0033503 IDA HULC complex
GO:0033523 IDA histone H2B ubiquitination
GO:0042393 IDA histone binding
GO:0045893 IMP positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167496 Rnf20-201 protein_coding Mus_musculus 0 3930
ENSMUST00000029989 Rnf20-001 protein_coding Mus_musculus 0 3930
ENSMUST00000156314 Rnf20-002 protein_coding Mus_musculus 0 2326
ENSMUST00000126675 Rnf20-003 processed_transcript Mus_musculus 0 1033
ENSMUST00000132782 Rnf20-004 processed_transcript Mus_musculus 0 885
ENSMUST00000149862 Rnf20-007 processed_transcript Mus_musculus 0 817
ENSMUST00000140341 Rnf20-006 protein_coding Mus_musculus 0 743
ENSMUST00000131962 Rnf20-008 processed_transcript Mus_musculus 0 479
ENSMUST00000146547 Rnf20-005 protein_coding Mus_musculus 0 422

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