C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028309 Rnf20 10090 + 4:49632006-49656887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029989 Rnf20-001 49632066-49656887 protein_coding
  ENSMUST00000126675 Rnf20-003 49632159-49642959 processed_transcript
  ENSMUST00000131962 Rnf20-008 49650263-49652826 processed_transcript
  ENSMUST00000132782 Rnf20-004 49632137-49640013 processed_transcript
  ENSMUST00000138490 Rnf20-009 49650968-49652550 processed_transcript
  ENSMUST00000140341 Rnf20-006 49632006-49638702 protein_coding
  ENSMUST00000146547 Rnf20-005 49632093-49644539 protein_coding
  ENSMUST00000149862 Rnf20-007 49641718-49648439 processed_transcript
  ENSMUST00000156314 Rnf20-002 49632060-49650251 protein_coding
  ENSMUST00000167496 Rnf20-201 49632060-49656886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029989ENSMUST00000131962ENSMUST00000146547ENSMUST00000156314ENSMUST00000167496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029989 4.950±0.45 2.442±0.67 8.396±0.79 11.474±1.38 4.895±1.74 2.283±0.40 3.847±0.68 3.719±0.62 3.907±1.75 7.629±2.56 3.801±0.72 7.792±3.85 9.809±3.18 4.776±1.00
ENSMUST00000131962 N/A N/A N/A 43.773±0.00 N/A N/A N/A N/A N/A N/A N/A 85.032±0.00 35.093±7.63 N/A
ENSMUST00000146547 10.959±0.00 20.461±5.71 N/A N/A 12.383±2.22 11.807±2.85 5.962±0.00 8.800±1.97 5.871±2.13 16.282±2.95 N/A 16.189±3.18 N/A 7.133±0.00
ENSMUST00000156314 4.223±1.15 3.305±1.08 N/A 15.594±0.00 5.413±2.53 4.884±1.58 2.175±0.49 1.951±0.34 N/A 4.975±1.40 N/A 7.656±6.43 12.247±3.81 1.627±0.00
ENSMUST00000167496 2.948±1.41 3.711±1.72 3.678±1.46 8.522±1.62 N/A 2.470±0.00 N/A 2.257±0.32 3.716±2.37 2.033±0.00 1.205±0.45 3.384±0.00 3.538±0.51 1.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034W CIL_00034W_0002 CGP 4:49584506-49656887
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000209 IEA protein polyubiquitination
GO:0002039 IEA p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 IEA transcription coactivator activity
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IEA histone monoubiquitination
GO:0016574 IMP histone ubiquitination
GO:0016874 IEA ligase activity
GO:0030336 IEA negative regulation of cell migration
GO:0031062 IMP positive regulation of histone methylation
GO:0031625 IEA ubiquitin protein ligase binding
GO:0033503 ISS HULC complex
GO:0033523 IEA histone H2B ubiquitination
GO:0042393 IEA histone binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016664 rnf20 ring finger protein 20, E3 ubiquitin protein ligase protein_coding Danio_rerio
ENSG00000155827 RNF20 ring finger protein 20, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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