C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518315 PSD3-004 ENSG00000156011 9606 - 8:18535637-18808832 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLungTestisENST00000518315
Transcript ID Bladder Colon Heart Lung Testis
ENST00000518315 0.896±0.00 2.882±0.00 4.830±0.00 2.045±0.00 10.914±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T2 CIL_0003T2_0001 CGP 8:18391245-19084730
CIL_0004EP CIL_0004EP_0001 CGP 8:18527301-19396218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IEA ARF guanyl-nucleotide exchange factor activity
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038959 Psd3-201 protein_coding Mus_musculus 0 1469
ENSMUST00000093468 Psd3-002 protein_coding Mus_musculus 0 1469
ENSMUST00000098696 Psd3-202 protein_coding Mus_musculus 0 1467
ENSMUST00000093469 Psd3-003 protein_coding Mus_musculus 0 1467
ENSMUST00000120071 Psd3-004 protein_coding Mus_musculus 0 1351
ENSMUST00000059374 Psd3-005 protein_coding Mus_musculus 0 989
ENSMUST00000150169 Psd3-001 retained_intron Mus_musculus 0 196

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