C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327040 PSD3-001 ENSG00000156011 9606 - 8:18527301-19013686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000327040
Transcript ID Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000327040 3.001±0.00 0.670±0.00 0.681±0.00 0.856±0.00 0.907±0.22 0.015±0.00 1.913±1.30 0.469±0.05 1.827±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T2 CIL_0003T2_0001 CGP 8:18391245-19084730
CIL_0004EP CIL_0004EP_0001 CGP 8:18527301-19396218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0016020 IEA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098696 Psd3-202 protein_coding Mus_musculus 0 2981
ENSMUST00000093469 Psd3-003 protein_coding Mus_musculus 0 2981
ENSMUST00000038959 Psd3-201 protein_coding Mus_musculus 0 2968
ENSMUST00000093468 Psd3-002 protein_coding Mus_musculus 0 1938
ENSMUST00000120071 Psd3-004 protein_coding Mus_musculus 0 1637
ENSMUST00000150169 Psd3-001 retained_intron Mus_musculus 0 1574
ENSMUST00000059374 Psd3-005 protein_coding Mus_musculus 0 989

Loading