C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156304 SCAF4 9606 - 21:31671033-31732075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286835 SCAF4-001 31671033-31732075 protein_coding
  ENST00000399804 SCAF4-002 31671033-31732075 protein_coding
  ENST00000434667 SCAF4-010 31671228-31731968 protein_coding
  ENST00000467731 SCAF4-003 31683995-31701823 retained_intron
  ENST00000472318 SCAF4-005 31690821-31693330 retained_intron
  ENST00000485790 SCAF4-004 31700759-31731961 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286835ENST00000399804ENST00000434667ENST00000467731ENST00000485790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286835 N/A N/A 1.599±0.00 N/A N/A N/A N/A N/A 1.928±0.00 2.227±0.00 4.195±0.00 1.759±0.00 N/A N/A
ENST00000399804 2.897±0.00 4.441±0.00 N/A 0.582±0.00 1.688±0.85 1.650±0.00 N/A 0.384±0.00 2.267±0.00 0.746±0.00 N/A 4.175±2.73 3.075±0.70 6.123±1.31
ENST00000434667 5.709±0.00 6.978±0.00 N/A 6.258±0.00 4.702±0.00 3.331±2.16 2.839±0.00 3.441±1.56 1.122±0.57 6.205±0.00 2.741±0.00 4.790±2.29 4.695±1.57 14.269±3.25
ENST00000467731 N/A N/A 0.894±0.00 0.182±0.00 N/A 1.384±0.00 N/A N/A N/A 2.315±0.00 1.411±0.00 1.267±0.00 N/A N/A
ENST00000485790 N/A N/A N/A 0.582±0.00 N/A N/A N/A N/A N/A N/A 2.722±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0002 CGP 21:31659622-31732075
CIL_0003N0 CIL_0003N0_0001 CGP 21:31671033-32044633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077093 scaf4a SR-related CTD-associated factor 4a protein_coding Danio_rerio
ENSMUSG00000022983 Scaf4 SR-related CTD-associated factor 4 protein_coding Mus_musculus

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