C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022983 Scaf4 10090 - 16:90228957-90284425 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039280 Scaf4-201 90229156-90284425 protein_coding
  ENSMUST00000163419 Scaf4-202 90228957-90284308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039280ENSMUST00000163419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039280 4.672±1.38 20.345±1.77 4.790±0.49 7.534±3.00 12.904±6.45 11.581±1.47 1.895±0.61 3.854±1.67 4.606±2.58 9.478±3.43 1.183±0.17 15.383±5.11 5.804±1.73 10.737±3.57
ENSMUST00000163419 3.871±0.68 4.189±0.64 3.269±0.04 5.873±1.38 4.087±0.11 2.394±0.56 1.431±0.22 2.208±0.61 2.529±1.04 2.480±0.67 1.380±0.47 7.557±4.38 8.401±3.87 6.530±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0003 CGP 16:90220742-90284425
CIL_0003N0 CIL_0003N0_0002 CGP 16:90228957-90499553

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077093 scaf4a SR-related CTD-associated factor 4a protein_coding Danio_rerio
ENSG00000156304 SCAF4 SR-related CTD-associated factor 4 protein_coding Homo_sapiens

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