C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399804 SCAF4-002 ENSG00000156304 9606 - 21:31671033-31732075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000399804
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000399804 2.897±0.00 4.441±0.00 0.582±0.00 1.688±0.85 1.650±0.00 0.384±0.00 2.267±0.00 0.746±0.00 4.175±2.73 3.075±0.70 6.123±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0002 CGP 21:31659622-31732075
CIL_0003N0 CIL_0003N0_0001 CGP 21:31671033-32044633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163419 Scaf4-202 protein_coding Mus_musculus 0 2961
ENSMUST00000039280 Scaf4-201 protein_coding Mus_musculus 0 1530

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