C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043848-ENSDARG00000077093 CGP 7955 10:26328825-26351271
GeneTranscriptPositionBiotype
ENSDARG00000043848 (sod1)
superoxide dismutase 1, soluble 		ENSDART00000064376 (sod1-001) 26328825-26333884 protein_coding
ENSDART00000135058 (sod1-002) 26331589-26333789 retained_intron
CIL_0000MH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142168-ENSG00000156304 CGP 9606 21:31659622-31732075
GeneTranscriptPositionBiotype
ENSG00000142168 (SOD1)
superoxide dismutase 1, soluble 		ENST00000270142 (SOD1-001) 31659622-31668931 protein_coding
ENST00000389995 (SOD1-002) 31659666-31668931 protein_coding
ENST00000470944 (SOD1-003) 31659709-31668931 processed_transcript
ENST00000476106 (SOD1-004) 31659693-31667341 processed_transcript
ENSG00000156304 (SCAF4)
SR-related CTD-associated factor 4 		ENST00000286835 (SCAF4-001) 31671033-31732075 protein_coding
ENST00000399804 (SCAF4-002) 31671033-31732075 protein_coding
ENST00000434667 (SCAF4-010) 31671228-31731968 protein_coding
ENST00000467731 (SCAF4-003) 31683995-31701823 retained_intron
ENST00000472318 (SCAF4-005) 31690821-31693330 retained_intron
ENST00000485790 (SCAF4-004) 31700759-31731961 retained_intron
ENSG00000229046 (HMGN1P2)
high mobility group nucleosome binding domain 1 pseudogene 2 		ENST00000445197 (HMGN1P2-001) 31706555-31706864 processed_pseudogene
ENSG00000238390 (SNORA81)
Small nucleolar RNA SNORA81 		ENST00000458922 (SNORA81.1-201) 31664306-31664482 snoRNA
ENSG00000273271 (AP000254.8)
 ENST00000609934 (AP000254.8-001) 31666728-31667247 antisense
CIL_0000MH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022982-ENSMUSG00000022983 CGP 10090 16:90220742-90284425
GeneTranscriptPositionBiotype
ENSMUSG00000022982 (Sod1)
superoxide dismutase 1, soluble 		ENSMUST00000023707 (Sod1-201) 90220742-90226322 protein_coding
ENSMUSG00000022983 (Scaf4)
SR-related CTD-associated factor 4 		ENSMUST00000039280 (Scaf4-201) 90229156-90284425 protein_coding
ENSMUST00000163419 (Scaf4-202) 90228957-90284308 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MH_0001ENSDARG00000043848ENSDART00000064376ENSDART00000135058CIL_0000MH_0002ENSG00000142168ENST00000270142ENST00000389995ENST00000470944ENST00000476106ENSG00000156304ENST00000286835ENST00000399804ENST00000434667ENST00000467731ENST00000472318ENST00000485790ENSG00000229046ENST00000445197ENSG00000238390ENST00000458922ENSG00000273271ENST00000609934CIL_0000MH_0003ENSMUSG00000022982ENSMUST00000023707ENSMUSG00000022983ENSMUST00000039280ENSMUST00000163419
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MH_0001ENSDARG00000043848ENSDART00000064376CIL_0000MH_0002ENSG00000142168ENST00000270142ENST00000389995ENST00000476106ENSG00000156304ENST00000286835ENST00000399804ENST00000434667ENST00000467731ENST00000485790ENSG00000229046ENST00000445197ENSG00000238390ENST00000458922ENSG00000273271ENST00000609934CIL_0000MH_0003ENSMUSG00000022982ENSMUST00000023707ENSMUSG00000022983ENSMUST00000039280ENSMUST00000163419
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043848 ENSDART00000064376 N/A N/A N/A 78.680±47.82 N/A N/A 51.041±44.10 60.072±78.92 30.333±0.00 N/A 35.053±0.00 N/A N/A N/A
ENSDART00000135058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142168 ENST00000270142 94.079±0.00 87.421±0.00 27.326±0.00 196.724±17.26 60.454±20.15 110.535±63.32 36.117±9.41 242.435±91.16 163.843±121.70 51.321±18.42 59.996±8.86 135.108±54.26 152.616±24.83 120.316±25.73
ENST00000389995 N/A N/A N/A N/A 17.167±0.00 N/A 13.936±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000470944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476106 44.948±0.00 47.081±0.00 N/A N/A 75.199±0.00 N/A N/A N/A N/A 32.668±0.00 N/A 86.177±0.00 62.334±0.00 72.121±0.00
ENSG00000156304 ENST00000286835 N/A N/A 1.599±0.00 N/A N/A N/A N/A N/A 1.928±0.00 2.227±0.00 4.195±0.00 1.759±0.00 N/A N/A
ENST00000399804 2.897±0.00 4.441±0.00 N/A 0.582±0.00 1.688±0.85 1.650±0.00 N/A 0.384±0.00 2.267±0.00 0.746±0.00 N/A 4.175±2.73 3.075±0.70 6.123±1.31
ENST00000434667 5.709±0.00 6.978±0.00 N/A 6.258±0.00 4.702±0.00 3.331±2.16 2.839±0.00 3.441±1.56 1.122±0.57 6.205±0.00 2.741±0.00 4.790±2.29 4.695±1.57 14.269±3.25
ENST00000467731 N/A N/A 0.894±0.00 0.182±0.00 N/A 1.384±0.00 N/A N/A N/A 2.315±0.00 1.411±0.00 1.267±0.00 N/A N/A
ENST00000472318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485790 N/A N/A N/A 0.582±0.00 N/A N/A N/A N/A N/A N/A 2.722±0.00 N/A N/A N/A
ENSG00000229046 ENST00000445197 N/A 0.193±0.00 N/A N/A 2.088±0.00 N/A N/A N/A 1.490±1.45 N/A N/A 0.793±0.16 N/A N/A
ENSG00000238390 ENST00000458922 0.640±0.00 0.644±0.00 N/A 0.400±0.00 0.231±0.00 N/A 0.149±0.00 N/A 0.486±0.00 0.070±0.00 N/A 1.376±1.20 N/A 0.216±0.00
ENSG00000273271 ENST00000609934 2.279±0.00 7.032±0.00 N/A 2.376±0.87 3.051±1.64 1.492±0.00 1.419±0.00 1.879±0.15 0.955±0.49 N/A 1.618±0.57 3.381±2.25 0.909±0.24 2.369±0.50
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022982 ENSMUST00000023707 307.701±37.23 458.905±147.51 583.193±38.70 295.543±105.44 283.570±7.95 194.687±16.98 203.975±13.06 537.295±52.18 826.094±251.42 320.687±25.24 186.820±5.22 408.648±278.85 469.129±121.52 237.608±121.96
ENSMUSG00000022983 ENSMUST00000039280 4.672±1.38 20.345±1.77 4.790±0.49 7.534±3.00 12.904±6.45 11.581±1.47 1.895±0.61 3.854±1.67 4.606±2.58 9.478±3.43 1.183±0.17 15.383±5.11 5.804±1.73 10.737±3.57
ENSMUST00000163419 3.871±0.68 4.189±0.64 3.269±0.04 5.873±1.38 4.087±0.11 2.394±0.56 1.431±0.22 2.208±0.61 2.529±1.04 2.480±0.67 1.380±0.47 7.557±4.38 8.401±3.87 6.530±1.32

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